Browse Element(s) Details


Os.47973.1.S1_x_at

Description gb:AK063350.1
DB_XREF= gi:32973368
TID=Os.47973.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47973 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B12, full insert sequence.
FL= gb:AK063350.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0298011/11formin homology 2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02940OsAffx.30249.1.S1_at11/1110+1198323..1199011hypothetical protein
LOC_Os10g02950NANA10+1200149..1200574hypothetical protein
LOC_Os10g02960NANA10+1201677..1206027retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02970OsAffx.20788.1.S1_at11/1110+1207807..1211176Leucine Rich Repeat family protein
LOC_Os10g02980Os.27263.1.S1_x_at11/1110+1218215..1225920formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02980Os.47973.1.S1_x_at11/1110+1218215..1225920formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02980OsAffx.32197.1.S1_x_at1/1110+1218215..1225920formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02990OsAffx.30250.1.S1_at11/1110+1227626..1229808Leucine Rich Repeat family protein
LOC_Os10g03000Os.46012.3.S1_x_at10/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000Os.46012.2.S1_x_at9/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000Os.46012.3.S1_at4/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000Os.27088.1.A1_x_at4/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000Os.54691.1.S1_x_at1/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03010Os.38751.1.A1_at6/1110+1234850..1236279retrotransposon protein, putative, unclassified
LOC_Os10g03010OsAffx.28492.1.S1_at1/1110+1234850..1236279retrotransposon protein, putative, unclassified
LOC_Os10g03010OsAffx.10020.1.S1_x_at1/1110+1234850..1236279retrotransposon protein, putative, unclassified
LOC_Os10g03020OsAffx.31869.1.S1_at10/1110+1237711..1238826retrotransposon protein, putative, unclassified
LOC_Os10g03020OsAffx.31869.5.S1_x_at7/1110+1237711..1238826retrotransposon protein, putative, unclassified
LOC_Os10g03020OsAffx.31869.3.S1_s_at3/1110+1237711..1238826retrotransposon protein, putative, unclassified
LOC_Os10g03020OsAffx.31869.4.S1_x_at1/1110+1237711..1238826retrotransposon protein, putative, unclassified
LOC_Os10g03020OsAffx.31869.4.S1_at1/1110+1237711..1238826retrotransposon protein, putative, unclassified
LOC_Os10g03020OsAffx.31869.2.S1_at1/1110+1237711..1238826retrotransposon protein, putative, unclassified
LOC_Os10g03030Os.38751.1.A1_at5/1110+1240040..1241469retrotransposon protein, putative, unclassified
LOC_Os10g03030OsAffx.10020.1.S1_x_at1/1110+1240040..1241469retrotransposon protein, putative, unclassified
LOC_Os10g03030OsAffx.28492.1.S1_at1/1110+1240040..1241469retrotransposon protein, putative, unclassified
LOC_Os10g03040Os.20851.1.A1_x_at2/1110+1242412..1247731retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03040OsAffx.5035.1.S1_at1/1110+1242412..1247731retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03040Os.55580.1.S1_at1/1110+1242412..1247731retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03040Os.6502.1.A1_at1/1110+1242412..1247731retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03040Os.6502.1.A1_x_at1/1110+1242412..1247731retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03050OsAffx.18098.1.S1_at11/1110+1249433..1250617Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47973.1.S1_x_at--69--9871Chr10:1225174..1225198 (25 bp)
TACACTGAAGTTCCATCTTTGCGAA
LOC_Os10g02980
Os.47973.1.S1_x_at--934--2831Chr10:1225197..1225221 (25 bp)
AAGTAGAGCCATGATCCAGCACCAG
LOC_Os10g02980
Os.47973.1.S1_x_at--355--1511Chr10:1225214..1225238 (25 bp)
AGCACCAGCCATGGCGGAGATGCCA
LOC_Os10g02980
Os.47973.1.S1_x_at--295--7431Chr10:1225243..1225267 (25 bp)
GTGTATTGTAAACGAGAACCTGCTT
LOC_Os10g02980
Os.47973.1.S1_x_at--331--3671Chr10:1225271..1225295 (25 bp)
CTTTTAGTGGACATGCAGGGCTGTA
LOC_Os10g02980
Os.47973.1.S1_x_at--332--3031Chr10:1225295..1225319 (25 bp)
AATGCCTGGAAGCTGCCTTGTTGGA
LOC_Os10g02980
Os.47973.1.S1_x_at--607--7451Chr10:1225548..1225572 (25 bp)
GTGTCATTTGGATTGCAACCTTGGA
LOC_Os10g02980
Os.47973.1.S1_x_at--798--4771Chr10:1225635..1225659 (25 bp)
GCTGCTGCTGACAGTTTTGGTGTAA
LOC_Os10g02980
Os.47973.1.S1_x_at--358--3551Chr10:1225697..1225721 (25 bp)
CATAGAATATGCAGCCCAAGTGGGA
LOC_Os10g02980
Os.47973.1.S1_x_at--583--1431Chr10:1225762..1225786 (25 bp)
AGAACAATCATGTTTCCCTTCGTCA
LOC_Os10g02980
Os.47973.1.S1_x_at--245--7051Chr10:1225862..1225886 (25 bp)
GTAAACAGCCATGATAACACCAGAA
LOC_Os10g02980
Target Sequence 
TACACTGAAGTTCCATCTTTGCGAAGTAGAGCCATGATCCAGCACCAGCCATGGCGGAGATGCCAAATTGTGTATTGTAA
ACGAGAACCTGCTTNTGCTTTTAGTGGACATGCAGGGCTGTAATGCCTGGAAGCTGCCTTGTTGGANGGGTGCGATCCNC
GAAANGGGTGTCATTTGGATTGCAACCTTGGAAAGTTNTGTGATTACCAATAGGCGGCATTGGCGATATGGNTGAGCGAA
GTGCAGCGANAANTGCTGCTGCTGACAGTTTTGGTGTAAATACAGTAGTTACTAGGATATAGTTGTATTNCCTGTACATA
GAATATGCAGCCCAAGTGGGAGGAAAGCAATTAAGCAAACANCAGTAGNGTTGTATAATCAAGAACAATCATGTTTCCCT
TCGTCACAGGNGTTAATTCGTGGCTCGCCAATTTNTNTTGTGCTTTGCATTTTGCTCCTTTNTAATGCNTTGGTTACTCA
AGTAAACAGCCATGATAACACCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47973.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis