Browse Element(s) Details


OsAffx.30250.1.S1_at

Description tigr:9638.m00205
TID=OsAffx.30250.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC116601 Putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0299011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02960NANA10+1201677..1206027retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02970OsAffx.20788.1.S1_at11/1110+1207807..1211176Leucine Rich Repeat family protein
LOC_Os10g02980Os.27263.1.S1_x_at11/1110+1218215..1225920formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02980Os.47973.1.S1_x_at11/1110+1218215..1225920formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02980OsAffx.32197.1.S1_x_at1/1110+1218215..1225920formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02990OsAffx.30250.1.S1_at11/1110+1227626..1229808Leucine Rich Repeat family protein
LOC_Os10g03000Os.46012.3.S1_x_at10/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000Os.46012.2.S1_x_at9/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000Os.46012.3.S1_at4/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000Os.27088.1.A1_x_at4/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000Os.54691.1.S1_x_at1/1110+1232066..1233550retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03010Os.38751.1.A1_at6/1110+1234850..1236279retrotransposon protein, putative, unclassified
LOC_Os10g03010OsAffx.28492.1.S1_at1/1110+1234850..1236279retrotransposon protein, putative, unclassified
LOC_Os10g03010OsAffx.10020.1.S1_x_at1/1110+1234850..1236279retrotransposon protein, putative, unclassified
LOC_Os10g03020OsAffx.31869.1.S1_at10/1110+1237711..1238826retrotransposon protein, putative, unclassified
LOC_Os10g03020OsAffx.31869.5.S1_x_at7/1110+1237711..1238826retrotransposon protein, putative, unclassified
LOC_Os10g03020OsAffx.31869.3.S1_s_at3/1110+1237711..1238826retrotransposon protein, putative, unclassified
LOC_Os10g03020OsAffx.31869.4.S1_x_at1/1110+1237711..1238826retrotransposon protein, putative, unclassified
LOC_Os10g03020OsAffx.31869.4.S1_at1/1110+1237711..1238826retrotransposon protein, putative, unclassified
LOC_Os10g03020OsAffx.31869.2.S1_at1/1110+1237711..1238826retrotransposon protein, putative, unclassified
LOC_Os10g03030Os.38751.1.A1_at5/1110+1240040..1241469retrotransposon protein, putative, unclassified
LOC_Os10g03030OsAffx.10020.1.S1_x_at1/1110+1240040..1241469retrotransposon protein, putative, unclassified
LOC_Os10g03030OsAffx.28492.1.S1_at1/1110+1240040..1241469retrotransposon protein, putative, unclassified
LOC_Os10g03040Os.20851.1.A1_x_at2/1110+1242412..1247731retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03040OsAffx.5035.1.S1_at1/1110+1242412..1247731retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03040Os.55580.1.S1_at1/1110+1242412..1247731retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03040Os.6502.1.A1_at1/1110+1242412..1247731retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03040Os.6502.1.A1_x_at1/1110+1242412..1247731retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03050OsAffx.18098.1.S1_at11/1110+1249433..1250617Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30250.1.S1_at--708--7531Chr10:1228242..1228266 (25 bp)
GTGGCTCAAGCTCTATCTTATTTGC
LOC_Os10g02990
OsAffx.30250.1.S1_at--1155--10191Chr10:1228224..1228248 (25 bp)
TATTTGCACCATGACTGCAGTCCAC
LOC_Os10g02990
OsAffx.30250.1.S1_at--332--2511Chr10:1228170..1228194 (25 bp)
AACATCCTACTTGATACAGCTTTCA
LOC_Os10g02990
OsAffx.30250.1.S1_at--205--4891Chr10:1228152..1228176 (25 bp)
GCTTTCAAGGCTTATGTCTCGGATT
LOC_Os10g02990
OsAffx.30250.1.S1_at--1103--5451Chr10:1227958..1227982 (25 bp)
GAACTGTCCTTCACATGTGTCGTGA
LOC_Os10g02990
OsAffx.30250.1.S1_at--1004--5131Chr10:1227857..1227881 (25 bp)
GCAAACTCTTTTGTCATCAGAACAG
LOC_Os10g02990
OsAffx.30250.1.S1_at--1149--4431Chr10:1227742..1227766 (25 bp)
GCCATTTCTTGCCTGGAAGCTTCTC
LOC_Os10g02990
OsAffx.30250.1.S1_at--625--5391Chr10:1227727..1227751 (25 bp)
GAAGCTTCTCCTCATGCAAGGCCAA
LOC_Os10g02990
OsAffx.30250.1.S1_at--231--6251Chr10:1227698..1227722 (25 bp)
GATGGAGGCATACCAGACTCTCATT
LOC_Os10g02990
OsAffx.30250.1.S1_at--492--131Chr10:1227676..1227700 (25 bp)
ATTCAGCAGCATTCCTCTAGCTCAT
LOC_Os10g02990
OsAffx.30250.1.S1_at--190--10011Chr10:1227659..1227683 (25 bp)
TAGCTCATGCCCTATACGTTTCAAT
LOC_Os10g02990
Target Sequence 
GTGGCTCAAGCTCTATCTTATTTGCACCATGACTGCAGTCCACCCATAATACATCGAGATATCACAAGTAACAACATCCT
ACTTGATACAGCTTTCAAGGCTTATGTCTCGGATTTTGGCACGGCAAGGATTTTGAAGCCGGATTCATCAAACTGGAGTG
CATTAGCGGGGACATATGGCTACATAGCTCCTGAACTGTCCTTCACATGTGTCGTGACAGAGAAATGTGATGTTTATAGC
TTTGGTGTTGTTGTTCTAGAGGTGGTAATGGGGAAGCATCCTATGGAATTGTTGCAAACTCTTTTGTCATCAGAACAGCA
ACATACATTGGTCAAAGAAATATTGGATGAACGGCCTACAGCACCCACAACAGCAGAAGAGGAAAGCATAGAAATTCTCA
TCAAGGTGGCCATTTCTTGCCTGGAAGCTTCTCCTCATGCAAGGCCAACAATGATGGAGGCATACCAGACTCTCATTCAG
CAGCATTCCTCTAGCTCATGCCCTATACGTTTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis