Browse Element(s) Details


Os.6502.1.A1_at

Description gb:AU165085
DB_XREF= gi:11414292
DB_XREF=AU165085
CLONE=Osim46
TID=Os.6502.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6502 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g267402/11retrotransposon protein, putative, unclassified
LOC_Os08g197502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g369001/11hypothetical protein
LOC_Os10g030401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g085691/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26670OsAffx.27028.1.S1_at11/115+15413502..15414040hypothetical protein
LOC_Os05g26670Os.8626.2.S1_at2/115+15413502..15414040hypothetical protein
LOC_Os05g26670Os.8626.3.S1_s_at1/115+15413502..15414040hypothetical protein
LOC_Os05g26680NANA5+15416574..15418571retrotransposon protein, putative, unclassified
LOC_Os05g26690Os.8502.5.S1_x_at7/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.8502.7.S1_x_at6/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.38512.1.S1_x_at4/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.8502.4.S1_at1/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26700OsAffx.27027.1.S1_at10/115+15427258..15427602hypothetical protein
LOC_Os05g26700OsAffx.27027.1.S1_x_at10/115+15427258..15427602hypothetical protein
LOC_Os05g26710OsAffx.16205.1.S1_at2/115+15431644..15433890hypothetical protein
LOC_Os05g26720Os.38512.1.S1_x_at6/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26720Os.8502.5.S1_x_at4/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26720Os.8502.7.S1_x_at3/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26730NANA5+15435865..15438524retrotransposon protein, putative, LINE subclass
LOC_Os05g26740OsAffx.27523.3.S1_at5/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740OsAffx.27523.2.S1_at5/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740OsAffx.27523.3.S1_x_at4/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740OsAffx.27523.4.S1_at3/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740Os.6502.1.A1_at2/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740Os.6502.1.A1_x_at1/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26750Os.8502.5.S1_x_at5/115+15446283..15446909Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26750Os.38512.1.S1_x_at5/115+15446283..15446909Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26760NANA5+15449151..15450765expressed protein
LOC_Os05g26770Os.8502.5.S1_x_at6/115+15452195..15452772Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26770Os.38512.1.S1_x_at5/115+15452195..15452772Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26770Os.8502.7.S1_x_at4/115+15452195..15452772Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26780NANA5+15457106..15458983transposon protein, putative, unclassified
LOC_Os05g26790NANA5+15460403..15461682retrotransposon protein, putative, unclassified
LOC_Os05g26800OsAffx.23442.1.S1_at1/115+15462640..15463935retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6502.1.A1_at--944--39351Chr12:4726374..4726397 (24 bp)
CGGCTTACAAGGATTGCATACATAA
NONE
Os.6502.1.A1_at--939--82920Chr11:19349498..19349520 (23 bp)
GGCTTACAAGGATTGCATACATAAT
NONE
Os.6502.1.A1_at--143--4971Chr07:12440495..12440519 (25 bp)
GCATACATAATGGATTTAGCCGATC
NONE
Os.6502.1.A1_at--391--2095Chr11:16373317..16373343 (25 bp)
ACATAATGGATTTAGCCGATCGCAA
NONE
Os.6502.1.A1_at--864--352Chr12:14602812..14602832 (21 bp)
ATAATGGATTTAGCCGATCGCAATA
NONE
Os.6502.1.A1_at--247--8310Chr11:18343276..18343299 (24 bp)
ATGGATTTAGCCGATCGCAATAAGA
NONE
Os.6502.1.A1_at--1001--79311Chr12:4726400..4726425 (25 bp)
GGATTTAGCCGATCGCAATAAGATT
NONE
Os.6502.1.A1_at--913--65311Chr12:4726401..4726426 (25 bp)
GATTTAGCCGATCGCAATAAGATTT
NONE
Os.6502.1.A1_at--630--104511Chr12:4726404..4726429 (25 bp)
TTAGCCGATCGCAATAAGATTTAAT
NONE
Os.6502.1.A1_at--967--4496Chr12:4726407..4726432 (25 bp)
GCCGATCGCAATAAGATTTAATTGT
NONE
Os.6502.1.A1_at--773--31715Chr12:4726427..4726451 (25 bp)
AATTGTTTAATATAATCTTGTGGAT
NONE
Target Sequence 
CGGCTTACAAGGATTGCATACATAATGGATTTAGCCGATCGCAATAAGATTTAATTGTTTAATATAATCTTGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6502.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis