Browse Element(s) Details


OsAffx.27028.1.S1_at

Description tigr:9633.m02415
TID=OsAffx.27028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2667011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26630Os.51571.1.S1_x_at6/115+15391672..15393502expressed protein
LOC_Os05g26640NANA5+15397547..15399409hypothetical protein
LOC_Os05g26649OsAffx.2606.1.S1_at1/115+15400130..15400822NA
LOC_Os05g26649OsAffx.8939.1.S1_x_at1/115+15400130..15400822NA
LOC_Os05g26660Os.53929.1.S1_at11/115+15404241..15410018EF hand family protein, expressed
LOC_Os05g26670OsAffx.27028.1.S1_at11/115+15413502..15414040hypothetical protein
LOC_Os05g26670Os.8626.2.S1_at2/115+15413502..15414040hypothetical protein
LOC_Os05g26670Os.8626.3.S1_s_at1/115+15413502..15414040hypothetical protein
LOC_Os05g26680NANA5+15416574..15418571retrotransposon protein, putative, unclassified
LOC_Os05g26690Os.8502.5.S1_x_at7/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.8502.7.S1_x_at6/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.38512.1.S1_x_at4/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.8502.4.S1_at1/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26700OsAffx.27027.1.S1_at10/115+15427258..15427602hypothetical protein
LOC_Os05g26700OsAffx.27027.1.S1_x_at10/115+15427258..15427602hypothetical protein
LOC_Os05g26710OsAffx.16205.1.S1_at2/115+15431644..15433890hypothetical protein
LOC_Os05g26720Os.38512.1.S1_x_at6/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26720Os.8502.5.S1_x_at4/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26720Os.8502.7.S1_x_at3/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26730NANA5+15435865..15438524retrotransposon protein, putative, LINE subclass
LOC_Os05g26740OsAffx.27523.3.S1_at5/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740OsAffx.27523.2.S1_at5/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740OsAffx.27523.3.S1_x_at4/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740OsAffx.27523.4.S1_at3/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740Os.6502.1.A1_at2/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740Os.6502.1.A1_x_at1/115+15438951..15443813retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27028.1.S1_at--677--7351Chr05:15413852..15413872 (21 bp)
GTGAAGTTCATATGTGATGGCTACC
LOC_Os05g26670
OsAffx.27028.1.S1_at--829--5331Chr05:15413850..15413872 (23 bp)
GAAGTTCATATGTGATGGCTACCAG
LOC_Os05g26670
OsAffx.27028.1.S1_at--94--2831Chr05:15413849..15413872 (24 bp)
AAGTTCATATGTGATGGCTACCAGC
LOC_Os05g26670
OsAffx.27028.1.S1_at--261--1231Chr05:15413848..15413872 (25 bp)
AGTTCATATGTGATGGCTACCAGCG
LOC_Os05g26670
OsAffx.27028.1.S1_at--111--6751Chr05:15413847..15413871 (25 bp)
GTTCATATGTGATGGCTACCAGCGT
LOC_Os05g26670
OsAffx.27028.1.S1_at--603--10551Chr05:15413846..15413870 (25 bp)
TTCATATGTGATGGCTACCAGCGTG
LOC_Os05g26670
OsAffx.27028.1.S1_at--364--8291Chr05:15413834..15413858 (25 bp)
GGCTACCAGCGTGTTGAAAGTTCCA
LOC_Os05g26670
OsAffx.27028.1.S1_at--223--4851Chr05:15413833..15413857 (25 bp)
GCTACCAGCGTGTTGAAAGTTCCAT
LOC_Os05g26670
OsAffx.27028.1.S1_at--800--3711Chr05:15413832..15413856 (25 bp)
CTACCAGCGTGTTGAAAGTTCCATG
LOC_Os05g26670
OsAffx.27028.1.S1_at--247--9971Chr05:15413831..15413855 (25 bp)
TACCAGCGTGTTGAAAGTTCCATGG
LOC_Os05g26670
OsAffx.27028.1.S1_at--691--1712Chr03:4564942..4565423 (25 bp)
ACCAGCGTGTTGAAAGTTCCATGGA
NONE
Target Sequence 
GTGAAGTTCATATGTGATGGCTACCAGCGTGTTGAAAGTTCCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis