Browse Element(s) Details


Os.6502.1.A1_x_at

Description gb:AU165085
DB_XREF= gi:11414292
DB_XREF=AU165085
CLONE=Osim46
TID=Os.6502.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6502 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g369001/11hypothetical protein
LOC_Os05g267401/11retrotransposon protein, putative, unclassified
LOC_Os08g197501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g085691/11Cycloartenol synthase, putative, expressed
LOC_Os10g030401/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36860Os.11734.1.S1_a_at11/111+20849294..20855064RNA helicase DB10, putative, expressed
LOC_Os01g36860Os.11734.3.S1_x_at5/111+20849294..20855064RNA helicase DB10, putative, expressed
LOC_Os01g36870Os.12434.1.S1_at11/111+20861935..20865792phox domain-containing protein, putative, expressed
LOC_Os01g36880OsAffx.2170.1.S1_s_at10/111+20866438..20867287hypothetical protein
LOC_Os01g36890Os.14280.1.S1_a_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.3.S1_x_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.3.S1_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.1.S1_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.1.S1_x_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.50777.1.S1_at4/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.2.S1_x_at4/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36900OsAffx.11357.1.S1_at11/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.22442.1.S1_x_at3/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.1331.1.S1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36910Os.35344.3.S1_x_at10/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36910Os.35344.18.S1_x_at8/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36910OsAffx.22940.5.S1_x_at3/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36920Os.14280.2.S1_x_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_a_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.2.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.50777.1.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_x_at8/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_at6/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.3.S1_x_at5/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36930Os.40926.1.S1_x_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.40926.1.S1_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.9089.1.S1_at9/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6502.1.A1_x_at--945--39351Chr12:4726374..4726397 (24 bp)
CGGCTTACAAGGATTGCATACATAA
NONE
Os.6502.1.A1_x_at--142--4971Chr07:12440495..12440519 (25 bp)
GCATACATAATGGATTTAGCCGATC
NONE
Os.6502.1.A1_x_at--390--2095Chr11:16373317..16373343 (25 bp)
ACATAATGGATTTAGCCGATCGCAA
NONE
Os.6502.1.A1_x_at--865--352Chr12:14602812..14602832 (21 bp)
ATAATGGATTTAGCCGATCGCAATA
NONE
Os.6502.1.A1_x_at--248--8310Chr11:18343276..18343299 (24 bp)
ATGGATTTAGCCGATCGCAATAAGA
NONE
Os.6502.1.A1_x_at--1000--79311Chr12:4726400..4726425 (25 bp)
GGATTTAGCCGATCGCAATAAGATT
NONE
Os.6502.1.A1_x_at--912--65311Chr12:4726401..4726426 (25 bp)
GATTTAGCCGATCGCAATAAGATTT
NONE
Os.6502.1.A1_x_at--631--104511Chr12:4726404..4726429 (25 bp)
TTAGCCGATCGCAATAAGATTTAAT
NONE
Os.6502.1.A1_x_at--966--4496Chr12:4726407..4726432 (25 bp)
GCCGATCGCAATAAGATTTAATTGT
NONE
Os.6502.1.A1_x_at--774--31715Chr12:4726427..4726451 (25 bp)
AATTGTTTAATATAATCTTGTGGAT
NONE
Os.6502.1.A1_x_at--910--7914Chr11:18590469..18590493 (25 bp)
GGATTTTATGACATCGGGCCTCCAG
NONE
Target Sequence 
CGGCTTACAAGGATTGCATACATAATGGATTTAGCCGATCGCAATAAGATTTAATTGTTTAATATAATCTTGTGGATTTT
ATGACATCGGGCCTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6502.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis