Browse Element(s) Details


Os.12434.1.S1_at

Description gb:AK070641.1
DB_XREF= gi:32980665
TID=Os.12434.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1156H12.12 (B1156H12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063K13, full insert sequence.
FL= gb:AK099741.1 gb:AK070641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3687011/11phox domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36850Os.31233.1.S1_at10/111+20845528..20848349transposon protein, putative, Pong sub-class, expressed
LOC_Os01g36860Os.11734.1.S1_a_at11/111+20849294..20855064RNA helicase DB10, putative, expressed
LOC_Os01g36860Os.11734.3.S1_x_at5/111+20849294..20855064RNA helicase DB10, putative, expressed
LOC_Os01g36870Os.12434.1.S1_at11/111+20861935..20865792phox domain-containing protein, putative, expressed
LOC_Os01g36880OsAffx.2170.1.S1_s_at10/111+20866438..20867287hypothetical protein
LOC_Os01g36890Os.14280.1.S1_a_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.3.S1_x_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.3.S1_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.1.S1_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.1.S1_x_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.50777.1.S1_at4/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.2.S1_x_at4/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36900OsAffx.11357.1.S1_at11/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.22442.1.S1_x_at3/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.1331.1.S1_at1/111+20876458..20885520hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12434.1.S1_at--829--771Chr01:20862330..20862354 (25 bp)
ATGTCCTTGCGGTAAGGGTGCTGCC
LOC_Os01g36870
Os.12434.1.S1_at--85--951Chr01:20862296..20862320 (25 bp)
AGGAAAATCGTTGCGCTTGAACAAG
LOC_Os01g36870
Os.12434.1.S1_at--968--3231Chr01:20862275..20862299 (25 bp)
CAAGCTGTGCGTGACGATGCAAGCA
LOC_Os01g36870
Os.12434.1.S1_at--1026--5151Chr01:20862257..20862281 (25 bp)
GCAAGCAGACCATCAACTCAGTTGA
LOC_Os01g36870
Os.12434.1.S1_at--324--511Chr01:20862222..20862246 (25 bp)
ATCGTTCTCCTCATCATCTGGTTTT
LOC_Os01g36870
Os.12434.1.S1_at--792--471Chr01:20862207..20862231 (25 bp)
ATCTGGTTTTTTCTCCGATATCATC
LOC_Os01g36870
Os.12434.1.S1_at--606--6511Chr01:20862191..20862215 (25 bp)
GATATCATCTCAAAGGCTAGGCCAG
LOC_Os01g36870
Os.12434.1.S1_at--977--8151Chr01:20862157..20862181 (25 bp)
GGAAACCAAGAAATAGCAGCCCTGT
LOC_Os01g36870
Os.12434.1.S1_at--974--5071Chr01:20862142..20862166 (25 bp)
GCAGCCCTGTAATTCTTATGGGTTC
LOC_Os01g36870
Os.12434.1.S1_at--84--231Chr01:20862068..20862092 (25 bp)
ATATTGTTGTGTTTTTCGCCACATA
LOC_Os01g36870
Os.12434.1.S1_at--370--9171Chr01:20862015..20862039 (25 bp)
TGCCGTGGAGCATTTTTAATTCATA
LOC_Os01g36870
Target Sequence 
ATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCA
GACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGG
CCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTCTTTGCCAGATACGTNTACATGAGCTCA
GTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCG
TGGAGCATTTTTAATTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis