Browse Element(s) Details


Os.31233.1.S1_at

Description gb:AK107646.1
DB_XREF= gi:32992855
TID=Os.31233.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1156H12.9 (B1156H12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-F07, full insert sequence.
FL= gb:AK107646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3685010/11transposon protein, putative, Pong sub-class, expressed
LOC_Os08g081301/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36840Os.15476.1.S1_s_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.52174.1.S1_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_x_at10/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.3.S1_x_at9/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_at8/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36850Os.31233.1.S1_at10/111+20845528..20848349transposon protein, putative, Pong sub-class, expressed
LOC_Os01g36860Os.11734.1.S1_a_at11/111+20849294..20855064RNA helicase DB10, putative, expressed
LOC_Os01g36860Os.11734.3.S1_x_at5/111+20849294..20855064RNA helicase DB10, putative, expressed
LOC_Os01g36870Os.12434.1.S1_at11/111+20861935..20865792phox domain-containing protein, putative, expressed
LOC_Os01g36880OsAffx.2170.1.S1_s_at10/111+20866438..20867287hypothetical protein
LOC_Os01g36890Os.14280.1.S1_a_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.3.S1_x_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.3.S1_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.1.S1_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.1.S1_x_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.50777.1.S1_at4/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.2.S1_x_at4/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31233.1.S1_at--42--1412Chr08:4611741..4611765 (25 bp)
AGACTTATAACAGCCTCATCTCACA
LOC_Os08g08130
Os.31233.1.S1_at--560--2532Chr08:4611650..4611674 (25 bp)
AACTCTTTTCCCTGAATCTGATTGA
NONE
Os.31233.1.S1_at--177--8552Chr08:4611487..4611511 (25 bp)
TGGAGGCTACTATCTTTGGCTATCT
NONE
Os.31233.1.S1_at--77--4412Chr08:4611455..4611479 (25 bp)
GCCAAATTATCTTGCTGTTTTTTCT
NONE
Os.31233.1.S1_at--431--9512Chr08:4611433..4611457 (25 bp)
TCTATCCTAAACCAACTTTTCCACT
NONE
Os.31233.1.S1_at--532--10652Chr08:4611415..4611439 (25 bp)
TTCCACTTTTTCTATCCTAAACTCT
NONE
Os.31233.1.S1_at--1058--10132Chr08:4611403..4611427 (25 bp)
TATCCTAAACTCTGGCTATTGGCAA
NONE
Os.31233.1.S1_at--120--753Chr05:25284587..25284606 (20 bp)
ATGTTTAATCTTTCAGCAGGTTCAG
NONE
Os.31233.1.S1_at--980--5013Chr05:25284597..25284814 (25 bp)
GCAGGTTCAGTGTATGTCTCAGTTT
NONE
Os.31233.1.S1_at--130--632Chr08:4611320..4611344 (25 bp)
ATGCTCAATCCACTAAGCCTATTTT
NONE
Os.31233.1.S1_at--364--4452Chr08:4611304..4611328 (25 bp)
GCCTATTTTGGTGCTTGTTCAGTGA
NONE
Target Sequence 
AGACTTATAACAGCCTCATCTCACAAGATACAAGTTCAATGTCTGCTGAGGAAAAGGCGCAGCGAGTTAGTATGATGAAG
TGTCTTATGAAAACTCTTTTCCCTGAATCTGATTGAACAGATATGTCAATTTTGCAAGTGGAGGCTACTATCTTTGGCTA
TCTGGTGAATGCCAAATTATCTTGCTGTTTTTTCTATCCTAAACCAACTTTTCCACTTTTTCTATCCTAAACTCTGGCTA
TTGGCAAGTTATGTTTAATCTTTCAGCAGGTTCAGTGTATGTCTCAGTTTATATAACTTTTGTTCATGCTCAATCCACTA
AGCCTATTTTGGTGCTTGTTCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis