Browse Element(s) Details


Os.14280.2.S1_x_at

Description gb:NM_193392.1
DB_XREF= gi:34913867
GEN=B1156H12.18
TID=Os.14280.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14280 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative DEAD BOX RNA helicase (B1156H12.18), mRNA.
PROD=putative DEAD BOX RNA helicase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3692011/11Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g368904/11Spliceosome RNA helicase Bat1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36890Os.14280.1.S1_a_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.3.S1_x_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.3.S1_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.1.S1_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.1.S1_x_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.50777.1.S1_at4/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.2.S1_x_at4/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36900OsAffx.11357.1.S1_at11/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.22442.1.S1_x_at3/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.1331.1.S1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36910Os.35344.3.S1_x_at10/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36910Os.35344.18.S1_x_at8/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36910OsAffx.22940.5.S1_x_at3/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36920Os.14280.2.S1_x_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_a_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.2.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.50777.1.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_x_at8/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_at6/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.3.S1_x_at5/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36930Os.40926.1.S1_x_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.40926.1.S1_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.9089.1.S1_at9/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36940Os.40925.1.S1_at8/111+20922069..20925696F-box domain containing protein, expressed
LOC_Os01g36950Os.4378.2.S1_a_at11/111+20926161..20929106expressed protein
LOC_Os01g36950OsAffx.2171.1.S1_at11/111+20926161..20929106expressed protein
LOC_Os01g36950Os.4378.4.S1_x_at10/111+20926161..20929106expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14280.2.S1_x_at--785--671Chr01:20901080..20901104 (25 bp)
ATGAGGCTAAACTGACCCTTCACGG
LOC_Os01g36920
Os.14280.2.S1_x_at--268--9691Chr01:20901099..20901200 (25 bp)
TCACGGGCTTGTTCAGCACTATATA
LOC_Os01g36920
Os.14280.2.S1_x_at--1064--6411Chr01:20901237..20901261 (25 bp)
GATCTCTTAGATGCACTTGACTTCA
LOC_Os01g36920
Os.14280.2.S1_x_at--548--7352Chr01:20901322..20901346 (25 bp)
GTGAATGCAACTTTCCTGCGATCTC
LOC_Os01g36920
Os.14280.2.S1_x_at--162--8331Chr01:20902152..20902176 (25 bp)
GGCTGACCCGGTACAAGAACTTCAA
LOC_Os01g36920
Os.14280.2.S1_x_at--270--6172Chr01:20902189..20902213 (25 bp)
GAGGATTCTTGTGGCTACTGATTTA
LOC_Os01g36920
Os.14280.2.S1_x_at--676--2392Chr01:20902255..20902279 (25 bp)
AAACTATGACATGCCCGATTCTGCT
LOC_Os01g36920
Os.14280.2.S1_x_at--684--5651Chr01:20902280..20902373 (25 bp)
GACTCGTATTTGCACAGGGTTGGAA
LOC_Os01g36920
Os.14280.2.S1_x_at--387--3092Chr01:20902405..20902429 (25 bp)
AATAACATTTGTTTCCTCTGCCTCA
LOC_Os01g36920
Os.14280.2.S1_x_at--586--6271Chr01:20902436..20902708 (25 bp)
GATGTTCTTAATCAATGCCTTCGTA
LOC_Os01g36920
Os.14280.2.S1_x_at--505--3071Chr01:20902445..20902717 (25 bp)
AATCAATGCCTTCGTAAAGATCCGG
LOC_Os01g36920
Target Sequence 
ATGAGGCTAAACTGACCCTTCACGGGCTTGTTCAGCACTATATAAAACTAAGTGAGGCGGAGAAGAACCGGAAATTGAAT
GATCTCTTAGATGCACTTGACTTCAATCAAGTTGTGATATTTGTTAAAAGTGTTAGTAGAGCTGCAGAACTGAACAAGCT
GCTTTGTGAATGCAACTTTCCTGCGATCTCCATACATTCTGGAATGACACAGGAGGAGAGGCTGACCCGGTACAAGAACT
TCAAGGAAGGACACAAGAGGATTCTTGTGGCTACTGATTTAGTTGGCAGGGGAATTGATATTGAACGTGTCAACATTGTC
ATAAACTATGACATGCCCGATTCTGCTGACTCGTATTTGCACAGGGTTGGAAGGGCTGGACGTTTTGGAACCAAAGGACT
TGCAATAACATTTGTTTCCTCTGCCTCAGACTCTGATGTTCTTAATCAATGCCTTCGTAAAGATCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14280.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis