Browse Element(s) Details


OsAffx.2171.1.S1_at

Description tigr:9629.m03494
TID=OsAffx.2171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3695011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36920Os.14280.2.S1_x_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_a_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.2.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.50777.1.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_x_at8/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_at6/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.3.S1_x_at5/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36930Os.40926.1.S1_x_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.40926.1.S1_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.9089.1.S1_at9/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36940Os.40925.1.S1_at8/111+20922069..20925696F-box domain containing protein, expressed
LOC_Os01g36950Os.4378.2.S1_a_at11/111+20926161..20929106expressed protein
LOC_Os01g36950OsAffx.2171.1.S1_at11/111+20926161..20929106expressed protein
LOC_Os01g36950Os.4378.4.S1_x_at10/111+20926161..20929106expressed protein
LOC_Os01g36960OsAffx.19542.3.S1_x_at10/111+20939332..20943554retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2171.1.S1_at--728--10651Chr01:20927625..20927649 (25 bp)
TTCCCTGCACAGGTACCATTGATCT
LOC_Os01g36950
OsAffx.2171.1.S1_at--531--6951Chr01:20927613..20927637 (25 bp)
GTACCATTGATCTTCAACTTCCCAT
LOC_Os01g36950
OsAffx.2171.1.S1_at--707--3251Chr01:20927599..20927623 (25 bp)
CAACTTCCCATGAATCAGATTGTTT
LOC_Os01g36950
OsAffx.2171.1.S1_at--967--6591Chr01:20927582..20927606 (25 bp)
GATTGTTTTCGCTCAAATTTCTGCA
LOC_Os01g36950
OsAffx.2171.1.S1_at--364--6811Chr01:20927578..20927602 (25 bp)
GTTTTCGCTCAAATTTCTGCACTTC
LOC_Os01g36950
OsAffx.2171.1.S1_at--736--191Chr01:20927566..20927590 (25 bp)
ATTTCTGCACTTCCACATGTTTTAA
LOC_Os01g36950
OsAffx.2171.1.S1_at--1155--6511Chr01:20927505..20927529 (25 bp)
GATTTAATTAAGTTGTGCTACCACC
LOC_Os01g36950
OsAffx.2171.1.S1_at--723--6631Chr01:20927494..20927518 (25 bp)
GTTGTGCTACCACCATAGTCTAGAA
LOC_Os01g36950
OsAffx.2171.1.S1_at--390--4851Chr01:20927489..20927513 (25 bp)
GCTACCACCATAGTCTAGAATCAAT
LOC_Os01g36950
OsAffx.2171.1.S1_at--626--7631Chr01:20927444..20927468 (25 bp)
GGGACGTGATATGCATCAGTTGCAA
LOC_Os01g36950
OsAffx.2171.1.S1_at--466--5371Chr01:20927403..20927427 (25 bp)
GAAGAATTGGTCCTTGCAAAGTAGA
LOC_Os01g36950
Target Sequence 
TTCCCTGCACAGGTACCATTGATCTTCAACTTCCCATGAATCAGATTGTTTTCGCTCAAATTTCTGCACTTCCACATGTT
TTAATATGTAATTAAGTGTATTTAGGAATTAGTTCTACTAGATTTAATTAAGTTGTGCTACCACCATAGTCTAGAATCAA
TCAATATGAGTTATGAAGATGGGGACGTGATATGCATCAGTTGCAAGGTTTGATGGGGGGAAGAAGAATTGGTCCTTGCA
AAGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis