Browse Element(s) Details


Os.4378.2.S1_a_at

Description gb:AK106151.1
DB_XREF= gi:32991360
TID=Os.4378.2
CNT=96
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.4378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1156H12.22 (B1156H12.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H09, full insert sequence.
FL= gb:AK067529.1 gb:AK100133.1 gb:AK106151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3695011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36920Os.14280.2.S1_x_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_a_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.2.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.50777.1.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_x_at8/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_at6/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.3.S1_x_at5/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36930Os.40926.1.S1_x_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.40926.1.S1_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.9089.1.S1_at9/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36940Os.40925.1.S1_at8/111+20922069..20925696F-box domain containing protein, expressed
LOC_Os01g36950Os.4378.2.S1_a_at11/111+20926161..20929106expressed protein
LOC_Os01g36950OsAffx.2171.1.S1_at11/111+20926161..20929106expressed protein
LOC_Os01g36950Os.4378.4.S1_x_at10/111+20926161..20929106expressed protein
LOC_Os01g36960OsAffx.19542.3.S1_x_at10/111+20939332..20943554retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4378.2.S1_a_at--322--2811Chr01:20926562..20926586 (25 bp)
AAGATTCGACGTGTATCCGTTGTGA
LOC_Os01g36950
Os.4378.2.S1_a_at--1049--5751Chr01:20926555..20926579 (25 bp)
GACGTGTATCCGTTGTGAGATATAC
LOC_Os01g36950
Os.4378.2.S1_a_at--714--7051Chr01:20926505..20926529 (25 bp)
GTAAGTAATTAACGGTGTGTGCTGA
LOC_Os01g36950
Os.4378.2.S1_a_at--831--8311Chr01:20926431..20926455 (25 bp)
GGCTAAGAGATGATGCGTCCCATTG
LOC_Os01g36950
Os.4378.2.S1_a_at--924--6291Chr01:20926423..20926447 (25 bp)
GATGATGCGTCCCATTGTATTTTTT
LOC_Os01g36950
Os.4378.2.S1_a_at--1012--6291Chr01:20926383..20926407 (25 bp)
GATGATGACTTCAGTCTGCAGAGGA
LOC_Os01g36950
Os.4378.2.S1_a_at--856--1151Chr01:20926371..20926395 (25 bp)
AGTCTGCAGAGGATTAGCCCCTTTG
LOC_Os01g36950
Os.4378.2.S1_a_at--542--9991Chr01:20926357..20926381 (25 bp)
TAGCCCCTTTGTTGTTGTAATATTT
LOC_Os01g36950
Os.4378.2.S1_a_at--1162--331Chr01:20926332..20926356 (25 bp)
ATACACACGTTATTTGCTTCTGGAC
LOC_Os01g36950
Os.4378.2.S1_a_at--642--1891Chr01:20926326..20926350 (25 bp)
ACGTTATTTGCTTCTGGACGGCCAG
LOC_Os01g36950
Os.4378.2.S1_a_at--1153--8111Chr01:20926311..20926335 (25 bp)
GGACGGCCAGCCATGTATAATACTT
LOC_Os01g36950
Target Sequence 
AAGATTCGACGTGTATCCGTTGTGAGATATACATACATAAATACATAAATACAAGTAGTAAGTAATTAACGGTGTGTGCT
GATGAATTTGGAACGATTAGTACAATTTCTGAGGGGGTTTCCCATCTCGCGGGCTAAGAGATGATGCGTCCCATTGTATT
TTTTTTNAATCATGTGCGATGATGATGACTTCAGTCTGCAGAGGATTAGCCCCTTTGTTGTTGTAATATTTATACACACG
TTATTTGCTTCTGGACGGCCAGCCATGTATAATACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4378.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis