Browse Element(s) Details


Os.40925.1.S1_at

Description gb:NM_193395.1
DB_XREF= gi:34913873
GEN=B1156H12.21
TID=Os.40925.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1156H12.21 (B1156H12.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1156H12.21 (B1156H12.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g369408/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36920Os.14280.2.S1_x_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_a_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.2.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.50777.1.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_x_at8/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_at6/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.3.S1_x_at5/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36930Os.40926.1.S1_x_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.40926.1.S1_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.9089.1.S1_at9/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36940Os.40925.1.S1_at8/111+20922069..20925696F-box domain containing protein, expressed
LOC_Os01g36950Os.4378.2.S1_a_at11/111+20926161..20929106expressed protein
LOC_Os01g36950OsAffx.2171.1.S1_at11/111+20926161..20929106expressed protein
LOC_Os01g36950Os.4378.4.S1_x_at10/111+20926161..20929106expressed protein
LOC_Os01g36960OsAffx.19542.3.S1_x_at10/111+20939332..20943554retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40925.1.S1_at--805--2971Chr01:20923561..20923585 (25 bp)
AATGAGTCACTTCTGGCTTAACGCA
LOC_Os01g36940
Os.40925.1.S1_at--703--3011Chr01:20923596..20923620 (25 bp)
AATGCATTCATGCTACCGGAGAGCT
LOC_Os01g36940
Os.40925.1.S1_at--966--1771Chr01:20923610..20923788 (25 bp)
ACCGGAGAGCTTTTCACAGGATACA
LOC_Os01g36940
Os.40925.1.S1_at--624--7951Chr01:20925182..20925205 (24 bp)
GGATACAACGCAGTGATGGACAGCT
LOC_Os01g36940
Os.40925.1.S1_at--202--7571Chr01:20925334..20925358 (25 bp)
GGGCATTTCCATGTTACCAACGTAT
LOC_Os01g36940
Os.40925.1.S1_at--192--411Chr01:20925359..20925383 (25 bp)
ATGAGTTCCGTAATGGCAGGTGGTA
LOC_Os01g36940
Os.40925.1.S1_at--850--5011Chr01:20925374..20925398 (25 bp)
GCAGGTGGTATATGGTTCATCACCA
LOC_Os01g36940
Os.40925.1.S1_at--299--7651Chr01:20925545..20925569 (25 bp)
GGGAGAGCTTTATTTCGCAGTTTTC
LOC_Os01g36940
Os.40925.1.S1_at--410--5033Chr12:1311117..1311136 (20 bp)
GCAGTTTTCTCCGTTTATTCATTTA
NONE
Os.40925.1.S1_at--44--9631NONE
TCATGAATCTCCTGGCTGTTGATAT
NONE
Os.40925.1.S1_at--27--8331NONE
GGCTGTTGATATCCCTTAAGTTTTT
NONE
Target Sequence 
AATGAGTCACTTCTGGCTTAACGCANACTATGTCAAATGCATTCATGCTACCGGAGAGCTTTTCACAGGATACAACGCAG
TGATGGACAGCTGGGGCCTGTTATTCAACTGGGNNCAGGATGGANGNNANGNCATTGCTTNCCAGCTACGGGATGTCNGA
GCTCGTGTTCTCGGTGAGGTGNCATGGGTTAACATGAANGCGCATGTTGATGTTGACNCTGGGCATTTCCATGTTACCAA
CGTATATGAGTTCCGTAATGGCAGGTGGTATATGGTTCATCACCATAGNNCGCTCATGGCTNGACCCNTGCTCCACATAA
TCTGTTTNNNTNNGAANGTTGAGCNACAGAATCATTTGCAGCTAAACTTCATGNACACATTTTTATGTTGCATNGCTTCT
TNTNNNATTTAGACTGGTGATAGATTAGGAACATATTTGGGGAGAGCTTTATTTCGCAGTTTTCTCCGTTTATTCATTTA
TCATGAATCTCCTGGCTGTTGATATCCCTTAAGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis