Browse Element(s) Details


Os.8502.4.S1_at

Description gb:AF042201.1
DB_XREF= gi:2827317
TID=Os.8502.4
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8502 (NCBI UniGene Cluster)
DEF=Oryza sativa seed prolamine mRNA, complete cds.
PROD=seed prolamine
FL= gb:AF042201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g264902/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g264802/11Prolamin PPROL 4A precursor, putative
LOC_Os05g266202/11Prolamin PPROL 14 precursor, putative
LOC_Os05g263592/11Prolamin PPROL 14 precursor, putative
LOC_Os05g263682/11Prolamin PPROL 14 precursor, putative
LOC_Os05g263772/11Prolamin PPROL 4A precursor, putative
LOC_Os05g264402/11Prolamin PPROL 4A precursor, putative
LOC_Os05g263861/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g266901/11Prolamin PPROL 14 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26450NANA5+15300004..15302401retrotransposon protein, putative, unclassified
LOC_Os05g26460Os.8502.7.S1_x_at11/115+15306773..15307374Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26460Os.8502.5.S1_x_at8/115+15306773..15307374Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26470Os.45173.1.S1_x_at1/115+15312027..15317728retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26480Os.8502.7.S1_x_at9/115+15320442..15320894Prolamin PPROL 4A precursor, putative
LOC_Os05g26480Os.8502.5.S1_x_at6/115+15320442..15320894Prolamin PPROL 4A precursor, putative
LOC_Os05g26480Os.8502.4.S1_at2/115+15320442..15320894Prolamin PPROL 4A precursor, putative
LOC_Os05g26490Os.8502.7.S1_x_at11/115+15322976..15323508Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26490Os.8502.5.S1_x_at8/115+15322976..15323508Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26490Os.8502.4.S1_at2/115+15322976..15323508Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26500NANA5+15325860..15330322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26510NANA5+15331130..15331783retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26520OsAffx.22896.1.S1_x_at1/115+15333746..15335696transposon protein, putative, unclassified
LOC_Os05g26530OsAffx.6485.1.S1_x_at1/115+15336777..15338428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26530OsAffx.6485.1.S1_at1/115+15336777..15338428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26540Os.51348.1.S1_x_at1/115+15342112..15344456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26540OsAffx.26218.1.S1_at1/115+15342112..15344456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26550Os.40360.1.S1_x_at1/115+15345349..15346563hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8502.4.S1_at--750--1651NONE
AGCGCCTCTCGCAGTTTGATTTTAG
NONE
Os.8502.4.S1_at--1147--4551NONE
GCGCCTCTCGCAGTTTGATTTTAGG
NONE
Os.8502.4.S1_at--280--4171NONE
CGCCTCTCGCAGTTTGATTTTAGGT
NONE
Os.8502.4.S1_at--818--4451NONE
GCCTCTCGCAGTTTGATTTTAGGTC
NONE
Os.8502.4.S1_at--816--4291NONE
CCTCTCGCAGTTTGATTTTAGGTCA
NONE
Os.8502.4.S1_at--496--1519Chr05:15255163..15255189 (25 bp)
AGCAGTATGGCATACGGCAACCCCT
LOC_Os05g26359
Os.8502.4.S1_at--1040--5017Chr05:15255164..15255190 (25 bp)
GCAGTATGGCATACGGCAACCCCTT
LOC_Os05g26359
Os.8502.4.S1_at--267--10091NONE
TATGGCATACGGCAACCCCTTCTTG
NONE
Os.8502.4.S1_at--549--8251NONE
GGCATACGGCAACCCCTTCTTGCAA
NONE
Os.8502.4.S1_at--848--5191NONE
GAATTTAACAGTATAATGGTCGGAA
NONE
Os.8502.4.S1_at--887--8871NONE
TAACAGTATAATGGTCGGAAGTTAA
NONE
Target Sequence 
AGCGCCTCTCGCAGTTTGATTTTAGGTCAAAGTTATAGGCAATATCAGCTGCAGTCGCCTGTCCTGCTACAGCAACAGGT
GCTTAGCCCATATAATGAGTTCGTAAGCAGCAGTATGGCATACGGCAACCCCTTCTTGCAATCAGCTGCGTTTCAACTGA
GAAACAACCAAGTCTGGCAACAGCTCGCGCTGGTGGCGCAACAATCTCACTATCAGGACATTAACATTGTTCAGGCCATA
GCGCAGCAGCTACAACTCCAGCAGTTTGGTGATCTCTACTTTGATCGGAATCTGGCTCAAGCTCAAGCTCTGTTGGCTTT
TAACGTGCCACCTAAATATGGTATCTACCCTAGGTACTATGGTGCACCCAGTACCATTACCACCCTTGGCGGTGTCTTGT
AATGAATTTAACAGTATAATGGTCGGAAGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8502.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis