Browse Element(s) Details

Os.8502.7.S1_x_at

Description

gb:BI804490
DB_XREF= gi:16577194
DB_XREF=H138C11
CLONE=H138C11
TID=Os.8502.7
CNT=24
FEA=EST
TIER=Stack
STK=22
UG=Os.8502 (NCBI UniGene Cluster)
UG_TITLE=MRNA for prolamin, complete cds, clone:lambda RM4
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g26386	11/11	Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26377	11/11	Prolamin PPROL 4A precursor, putative
LOC_Os05g26400	11/11	Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26460	11/11	Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26490	11/11	Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26359	10/11	Prolamin PPROL 14 precursor, putative
LOC_Os05g26350	10/11	Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26368	10/11	Prolamin PPROL 14 precursor, putative
LOC_Os05g26480	9/11	Prolamin PPROL 4A precursor, putative
LOC_Os05g26620	8/11	Prolamin PPROL 14 precursor, putative
LOC_Os05g26440	7/11	Prolamin PPROL 4A precursor, putative
LOC_Os05g26240	7/11	Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26250	6/11	hypothetical protein
LOC_Os05g26690	6/11	Prolamin PPROL 14 precursor, putative
LOC_Os05g26770	4/11	Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26720	3/11	Prolamin PPROL 14 precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g26330	NA	NA	5	+	15238953..15240515	retrotransposon protein, putative, unclassified
LOC_Os05g26340	NA	NA	5	+	15244743..15246108	hypothetical protein
LOC_Os05g26350	Os.8502.7.S1_x_at	10/11	5	+	15252383..15253009	Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26350	Os.8502.5.S1_x_at	9/11	5	+	15252383..15253009	Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26359	Os.8502.7.S1_x_at	10/11	5	+	15255006..15255320	Prolamin PPROL 14 precursor, putative
LOC_Os05g26359	Os.8502.5.S1_x_at	8/11	5	+	15255006..15255320	Prolamin PPROL 14 precursor, putative
LOC_Os05g26359	Os.8502.4.S1_at	2/11	5	+	15255006..15255320	Prolamin PPROL 14 precursor, putative
LOC_Os05g26368	Os.8502.7.S1_x_at	10/11	5	+	15257567..15257881	Prolamin PPROL 14 precursor, putative
LOC_Os05g26368	Os.8502.5.S1_x_at	8/11	5	+	15257567..15257881	Prolamin PPROL 14 precursor, putative
LOC_Os05g26368	Os.8502.4.S1_at	2/11	5	+	15257567..15257881	Prolamin PPROL 14 precursor, putative
LOC_Os05g26377	Os.8502.7.S1_x_at	11/11	5	+	15260066..15260722	Prolamin PPROL 4A precursor, putative
LOC_Os05g26377	Os.8502.5.S1_x_at	9/11	5	+	15260066..15260722	Prolamin PPROL 4A precursor, putative
LOC_Os05g26377	Os.8502.4.S1_at	2/11	5	+	15260066..15260722	Prolamin PPROL 4A precursor, putative
LOC_Os05g26386	Os.8502.7.S1_x_at	11/11	5	+	15262661..15263253	Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26386	Os.8502.5.S1_x_at	9/11	5	+	15262661..15263253	Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26386	Os.8502.4.S1_at	1/11	5	+	15262661..15263253	Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26400	Os.8502.7.S1_x_at	11/11	5	+	15265191..15265815	Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26400	Os.8502.5.S1_x_at	9/11	5	+	15265191..15265815	Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26410	Os.45173.5.S1_x_at	4/11	5	+	15271810..15277462	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26420	NA	NA	5	+	15282663..15286442	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26430	Os.46314.2.S1_x_at	2/11	5	+	15286852..15291901	retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.8502.7.S1_x_at--150--311	11	Chr05:15252533..15252557 (25 bp)	AATATCAGCTGCAGTCGCCTGTCCT	LOC_Os05g26350
Os.8502.7.S1_x_at--118--161	10	Chr05:15252539..15252563 (25 bp)	AGCTGCAGTCGCCTGTCCTGCTACA	LOC_Os05g26350
Os.8502.7.S1_x_at--1143--387	8	Chr05:15255112..15255136 (25 bp)	CTGTCCTGCTACAGCAACAGGTGCT	LOC_Os05g26359
Os.8502.7.S1_x_at--581--939	14	Chr05:15252593..15252617 (25 bp)	TCGTAAGGCAGCAGTATGGCATAGC	LOC_Os05g26350
Os.8502.7.S1_x_at--888--849	12	Chr05:15188438..15188462 (25 bp)	TGGCATAGCGGCAAGCCCCTTCTTG	LOC_Os05g26240
Os.8502.7.S1_x_at--733--809	15	Chr05:15188540..15188564 (25 bp)	GGACATTAACATTGTTCAGGCCATA	LOC_Os05g26240
Os.8502.7.S1_x_at--539--567	14	Chr05:15188541..15188565 (25 bp)	GACATTAACATTGTTCAGGCCATAG	LOC_Os05g26240
Os.8502.7.S1_x_at--1098--207	14	Chr05:15188542..15188566 (25 bp)	ACATTAACATTGTTCAGGCCATAGC	LOC_Os05g26240
Os.8502.7.S1_x_at--403--359	15	Chr05:15188543..15188567 (25 bp)	CATTAACATTGTTCAGGCCATAGCG	LOC_Os05g26240
Os.8502.7.S1_x_at--660--981	15	Chr05:15188546..15188570 (25 bp)	TAACATTGTTCAGGCCATAGCGCAG	LOC_Os05g26240
Os.8502.7.S1_x_at--136--1085	14	Chr05:15188590..15188614 (25 bp)	TTGGTGATCTCTACTTTGATCGGAA	LOC_Os05g26240

Target Sequence

AATATCAGCTGCAGTCGCCTGTCCTGCTACAGCAACAGGTGCTTAGCCCATATAATGAGTTCGTAAGGCAGCAGTATGGC
ATAGCGGCAAGCCCCTTCTTGCAATCAGCTGCGTTTCAACTGAGAAACAACCAAGTCTGGCAACATCTCGCGCTGGTGGC
GCAACAATCTCACTATCAGGACATTAACATTGTTCAGGCCATAGCGCAGCAGCTACAACTCCAGCAGTTTGGTGATCTCT
ACTTTGATCGGAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis