Browse Element(s) Details


Os.8502.5.S1_x_at

Description gb:X53857.1
DB_XREF= gi:20303
TID=Os.8502.5
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.8502 (NCBI UniGene Cluster)
DEF=O. sativa mRNA for prolamin (clone pX24).
PROD=prolamin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g264009/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g263509/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g263869/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g263779/11Prolamin PPROL 4A precursor, putative
LOC_Os05g264608/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g264908/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g263688/11Prolamin PPROL 14 precursor, putative
LOC_Os05g263598/11Prolamin PPROL 14 precursor, putative
LOC_Os05g266907/11Prolamin PPROL 14 precursor, putative
LOC_Os05g267706/11Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g264406/11Prolamin PPROL 4A precursor, putative
LOC_Os05g264806/11Prolamin PPROL 4A precursor, putative
LOC_Os05g266206/11Prolamin PPROL 14 precursor, putative
LOC_Os05g262405/11Prolamin PPROL 14 precursor, putative, expressed
LOC_Os07g119005/11Prolamin PPROL 4A precursor, putative
LOC_Os05g267505/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g119505/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g262505/11hypothetical protein
LOC_Os07g119205/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g119105/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g267204/11Prolamin PPROL 14 precursor, putative, expressed
LOC_Os12g170303/11hypothetical protein
LOC_Os12g168903/11Prolamin PPROL 17 precursor, putative, expressed
LOC_Os12g168802/11Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g105701/1113 kDa prolamin precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26330NANA5+15238953..15240515retrotransposon protein, putative, unclassified
LOC_Os05g26340NANA5+15244743..15246108hypothetical protein
LOC_Os05g26350Os.8502.7.S1_x_at10/115+15252383..15253009Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26350Os.8502.5.S1_x_at9/115+15252383..15253009Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26359Os.8502.7.S1_x_at10/115+15255006..15255320Prolamin PPROL 14 precursor, putative
LOC_Os05g26359Os.8502.5.S1_x_at8/115+15255006..15255320Prolamin PPROL 14 precursor, putative
LOC_Os05g26359Os.8502.4.S1_at2/115+15255006..15255320Prolamin PPROL 14 precursor, putative
LOC_Os05g26368Os.8502.7.S1_x_at10/115+15257567..15257881Prolamin PPROL 14 precursor, putative
LOC_Os05g26368Os.8502.5.S1_x_at8/115+15257567..15257881Prolamin PPROL 14 precursor, putative
LOC_Os05g26368Os.8502.4.S1_at2/115+15257567..15257881Prolamin PPROL 14 precursor, putative
LOC_Os05g26377Os.8502.7.S1_x_at11/115+15260066..15260722Prolamin PPROL 4A precursor, putative
LOC_Os05g26377Os.8502.5.S1_x_at9/115+15260066..15260722Prolamin PPROL 4A precursor, putative
LOC_Os05g26377Os.8502.4.S1_at2/115+15260066..15260722Prolamin PPROL 4A precursor, putative
LOC_Os05g26386Os.8502.7.S1_x_at11/115+15262661..15263253Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26386Os.8502.5.S1_x_at9/115+15262661..15263253Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26386Os.8502.4.S1_at1/115+15262661..15263253Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26400Os.8502.7.S1_x_at11/115+15265191..15265815Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26400Os.8502.5.S1_x_at9/115+15265191..15265815Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26410Os.45173.5.S1_x_at4/115+15271810..15277462retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26420NANA5+15282663..15286442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26430Os.46314.2.S1_x_at2/115+15286852..15291901retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8502.5.S1_x_at--229--53519Chr05:15252447..15252471 (25 bp)
GAAGATCATTTTCGTCTTTGCTCTC
LOC_Os05g26350
Os.8502.5.S1_x_at--1051--102720Chr12:9738194..9738218 (25 bp)
TTTGCTCTCCTTGCTATTGCTGCAT
LOC_Os12g17030
Os.8502.5.S1_x_at--1000--94922Chr12:9738199..9738222 (24 bp)
TCTCCTTGCTATTGCTGCATGCAGG
LOC_Os12g17030
Os.8502.5.S1_x_at--73--10736Chr07:6619065..6619146 (25 bp)
TTGCTATTGCTGCATGCAGGCCTCT
LOC_Os07g11950
Os.8502.5.S1_x_at--84--102318Chr12:9738208..9738231 (23 bp)
TATTGCTGCATGCAGGCCTCTGCAG
LOC_Os12g17030
Os.8502.5.S1_x_at--345--9051NONE
TGCATGCAGGCCTCTGCAGTTTGAT
NONE
Os.8502.5.S1_x_at--408--50113Chr05:15252488..15252515 (25 bp)
GCAGGCCTCTGCAGTTTGATGTTTT
LOC_Os05g26350
Os.8502.5.S1_x_at--476--8914Chr05:15199500..15199524 (23 bp)
AGGCCTCTGCAGTTTGATGTTTTAG
NONE
Os.8502.5.S1_x_at--589--42919Chr05:15199501..15199527 (25 bp)
CCTCTGCAGTTTGATGTTTTAGGTC
NONE
Os.8502.5.S1_x_at--454--104315Chr07:5735310..5735330 (21 bp)
TTAGGTCAAAGTTATAGGCAATATC
LOC_Os07g10570
Os.8502.5.S1_x_at--135--108514Chr05:15188590..15188614 (25 bp)
TTGGTGATCTCTACTTTGATCGGAA
LOC_Os05g26240
Target Sequence 
GAAGATCATTTTCGTCTTTGCTCTCCTTGCTATTGCTGCATGCAGGCCTCTGCAGTTTGATGTTTTAGGTCAAAGTTATA
GGCAATATCNNNNNNNNNNGCCTGTCCTGCTACAGCAACATGTGCTTAGCCCATATAATGAGTTCGTAAGGCAGCAGTAT
GGCATAGCGGCAAGCCCCTTCTTGCAATCAGCTGNGTTTCAACTGAGAAACAACCAAGTCTGGCAACAGCTCGCGCTGGT
GGCNNNANNNTCNCNNTNNNNGNNNNTNANNNTNGTTCAGGCCATAGCGCANNAGCTACAACTCCAGCAGTTTGGTGATC
TCTACTTTGATCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8502.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis