Browse Element(s) Details


OsAffx.6485.1.S1_x_at

Description tigr:9637.m02997
TID=OsAffx.6485.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to Leishmania major. L411.4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3572010/11hypothetical protein
LOC_Os05g265301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35670Os.18156.1.S1_at11/119+20518764..20522095expressed protein
LOC_Os09g35680Os.8347.1.S1_at11/119+20522219..20524930F-box family protein, putative, expressed
LOC_Os09g35690Os.14356.1.S1_at11/119+20528087..20531756Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g35700Os.12835.1.S1_at10/119+20533684..20534467YY1 protein precursor, putative, expressed
LOC_Os09g35710Os.4853.1.S1_at11/119+20534840..20539762UBX domain containing protein, expressed
LOC_Os09g35710Os.4853.1.S2_at11/119+20534840..20539762UBX domain containing protein, expressed
LOC_Os09g35720OsAffx.6485.1.S1_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35720OsAffx.6485.1.S1_x_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35730Os.7783.1.S1_at11/119+20549370..20552826membrane protein, putative, expressed
LOC_Os09g35740Os.41257.1.S1_at1/119+20557515..20558112hypothetical protein
LOC_Os09g35750OsAffx.30143.1.S1_at10/119+20559756..20561287hypothetical protein
LOC_Os09g35760Os.57414.1.S1_x_at11/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760OsAffx.6486.1.S1_x_at10/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760Os.57416.1.S1_x_at1/119+20568102..20573844OCL3 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6485.1.S1_x_at--1120--291Chr09:20542336..20542360 (25 bp)
ATAGCCGATCTAGAATTTATTGTCC
LOC_Os09g35720
OsAffx.6485.1.S1_x_at--15--192Chr05:15337863..15337916 (24 bp)
ATTTATTGTCCTTTTGCTTTTGTTG
LOC_Os05g26530
OsAffx.6485.1.S1_x_at--162--2811Chr09:20542150..20542321 (25 bp)
AAGTGCAACGAGATTGGTTCGTCCG
LOC_Os09g35720
OsAffx.6485.1.S1_x_at--600--5411Chr09:20542090..20542114 (25 bp)
GAAGCCATCAAAGCCTGGTGCGCCA
LOC_Os09g35720
OsAffx.6485.1.S1_x_at--591--7531Chr09:20542061..20542085 (25 bp)
GTGGCACATGCTGATTAATTTCTTC
LOC_Os09g35720
OsAffx.6485.1.S1_x_at--504--9751NONE
TAATTTCTTCACTGTCCTGTGGCTT
NONE
OsAffx.6485.1.S1_x_at--417--8651Chr09:20541682..20541706 (25 bp)
TGTGGCTTCTGCACCGGAAAGGGCT
LOC_Os09g35720
OsAffx.6485.1.S1_x_at--863--5571Chr09:20541666..20541690 (25 bp)
GAAAGGGCTCTTCGATCCACTGTAC
LOC_Os09g35720
OsAffx.6485.1.S1_x_at--9--2791Chr09:20541584..20541608 (25 bp)
AAGAGAGCTCACAGCCACAGGCACT
LOC_Os09g35720
OsAffx.6485.1.S1_x_at--355--331Chr09:20541488..20541512 (25 bp)
ATACATGACGACGACGACCCGGTGG
LOC_Os09g35720
OsAffx.6485.1.S1_x_at--393--2131Chr09:20541391..20541415 (25 bp)
ACAGGGACGGGCTCAAGCTCAACAA
LOC_Os09g35720
Target Sequence 
ATAGCCGATCTAGAATTTATTGTCCTTTTGCTTTTGTTGAAGTGCAACGAGATTGGTTCGTCCGAAAACCACACAAAGGG
TGGCATCTGGGGTTTCTTTGAAGCCATCAAAGCCTGGTGCGCCAAAATGTGGCACATGCTGATTAATTTCTTCACTGTCC
TGTGGCTTCTGCACCGGAAAGGGCTCTTCGATCCACTGTACTATTGGTGGGACGGCGTGGTCGGGTCGGAGGCGCAGGAG
CGCGCGCGCCGGAGGCACAAGAGAGCTCACAGCCACAGGCACTCCCACCACCACGACGCGCACAAGAGGCACAAGACCGA
GCTTGCCGGCCACCGCCGCCACCACGTCCTCCACATACATGACGACGACGACCCGGTGGCGGCGGCGGCGGCGGCGGAGC
ACGTCATCCTCCGCCGGCACGGCAGGCACGAGGCGGCGCTCGGCGTGCAGCACAGGGACGGGCTCAAGCTCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6485.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis