Browse Element(s) Details


Os.12835.1.S1_at

Description gb:D23674.1
DB_XREF= gi:432367
TID=Os.12835.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12835 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for elongation factor 1 beta, complete cds.
PROD=elongation factor 1 beta
FL= gb:AK107918.1 gb:D23674.1 gb:D50575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3570010/11YY1 protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35660NANA9+20509216..20513394retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35670Os.18156.1.S1_at11/119+20518764..20522095expressed protein
LOC_Os09g35680Os.8347.1.S1_at11/119+20522219..20524930F-box family protein, putative, expressed
LOC_Os09g35690Os.14356.1.S1_at11/119+20528087..20531756Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g35700Os.12835.1.S1_at10/119+20533684..20534467YY1 protein precursor, putative, expressed
LOC_Os09g35710Os.4853.1.S1_at11/119+20534840..20539762UBX domain containing protein, expressed
LOC_Os09g35710Os.4853.1.S2_at11/119+20534840..20539762UBX domain containing protein, expressed
LOC_Os09g35720OsAffx.6485.1.S1_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35720OsAffx.6485.1.S1_x_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35730Os.7783.1.S1_at11/119+20549370..20552826membrane protein, putative, expressed
LOC_Os09g35740Os.41257.1.S1_at1/119+20557515..20558112hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12835.1.S1_at--699--4691Chr09:20533743..20533767 (25 bp)
GCGGCAGAAGACACTCACGGCGATG
LOC_Os09g35700
Os.12835.1.S1_at--469--4151Chr09:20534035..20534166 (25 bp)
CGCGTCACCTGCCAGTGATGGAGAT
LOC_Os09g35700
Os.12835.1.S1_at--885--2891Chr09:20534175..20534199 (25 bp)
AAGGTAATTGCGTTTGCTCGTGCGA
LOC_Os09g35700
Os.12835.1.S1_at--277--5151Chr09:20534235..20534259 (25 bp)
GCAACAAGTCATCAGGCGATCCGAT
LOC_Os09g35700
Os.12835.1.S1_at--799--891Chr09:20534248..20534272 (25 bp)
AGGCGATCCGATCCCTGCAGCTATG
LOC_Os09g35700
Os.12835.1.S1_at--934--4011Chr09:20534285..20534309 (25 bp)
CGTAGTAGTGGTCTCGTTAGCATCT
LOC_Os09g35700
Os.12835.1.S1_at--922--9391Chr09:20534298..20534322 (25 bp)
TCGTTAGCATCTGTGTGTCGCATAT
LOC_Os09g35700
Os.12835.1.S1_at--728--7471NONE
GTGTGTCGCATATGCAGCGCCGTGC
NONE
Os.12835.1.S1_at--981--7291Chr09:20534330..20534354 (25 bp)
GTGCGTGCCGTGTCTGTCCTGCTTG
LOC_Os09g35700
Os.12835.1.S1_at--626--3631Chr09:20534351..20534375 (25 bp)
CTTGCTCTGCTGATCGTTCAATGAA
LOC_Os09g35700
Os.12835.1.S1_at--328--5611Chr09:20534377..20534401 (25 bp)
GACAAATTAATCTAACTCTGGAGTG
LOC_Os09g35700
Target Sequence 
GCGGCAGAAGACACTCACGGCGATGGCAGGTGACGAGGACGGCGCTGCTGGTGGTGTTGGTAGCGGGGGCGATGACGATG
ACGATGCGCGGGGCGGAGGCGCAGCAGCCGAGCTGCGCGGCGCAGCTCACGCAGCTGGCGCCGTGCGCGCGAGTCGGCGT
GGCGCCGGCGCCGGGGCAGCCGCTGCCGGCGCCCCCGGCGGAGTGCTGCTCGGCGCTGGGCGCCGTGTCGCACGACTGCG
CCTGCGGCACGCTCGACATCATCAACAGCCTCCCCGCCAAGTGCGGCCTCCCGCGCGTCACCTGCCAGTGATGGAGATGG
TGTGCCAAGGTAATTGCGTTTGCTCGTGCGAGGATGAGAAGAGAAGATTGAATAAGATGTTTGATGGCAACAAGTCATCA
GGCGATCCGATCCCTGCAGCTATGAATGGGAGTATACGTAGTAGTGGTCTCGTTAGCATCTGTGTGTCGCATATGCAGCG
CCGTGCGTGCCGTGTCTGTCCTGCTTGCTCTGCTGATCGTTCAATGAACGACAAATTAATCTAACTCTGGAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis