Browse Element(s) Details


Os.18156.1.S1_at

Description gb:AK072623.1
DB_XREF= gi:32982646
TID=Os.18156.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131H02, full insert sequence.
FL= gb:AK072623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3567011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35630Os.51065.1.S1_at11/119+20493593..20496430BAG domain-containing protein, putative, expressed
LOC_Os09g35640NANA9+20500280..20500567hypothetical protein
LOC_Os09g35650Os.46012.2.S1_x_at7/119+20506068..20507554retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35650Os.27088.1.A1_x_at4/119+20506068..20507554retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35650Os.46012.3.S1_x_at2/119+20506068..20507554retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35650Os.54691.1.S1_x_at1/119+20506068..20507554retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35660NANA9+20509216..20513394retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35670Os.18156.1.S1_at11/119+20518764..20522095expressed protein
LOC_Os09g35680Os.8347.1.S1_at11/119+20522219..20524930F-box family protein, putative, expressed
LOC_Os09g35690Os.14356.1.S1_at11/119+20528087..20531756Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g35700Os.12835.1.S1_at10/119+20533684..20534467YY1 protein precursor, putative, expressed
LOC_Os09g35710Os.4853.1.S1_at11/119+20534840..20539762UBX domain containing protein, expressed
LOC_Os09g35710Os.4853.1.S2_at11/119+20534840..20539762UBX domain containing protein, expressed
LOC_Os09g35720OsAffx.6485.1.S1_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35720OsAffx.6485.1.S1_x_at10/119+20541270..20547711hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18156.1.S1_at--581--6151Chr09:20521418..20521442 (25 bp)
GAGGTCTCATCCTAAGAAGAACGTT
LOC_Os09g35670
Os.18156.1.S1_at--780--8131Chr09:20521497..20521521 (25 bp)
GGAAAGCGACCATATTATCTGAAGA
LOC_Os09g35670
Os.18156.1.S1_at--967--8151Chr09:20521771..20521795 (25 bp)
GGAAAGCTTGATGCCTTCATGGAGA
LOC_Os09g35670
Os.18156.1.S1_at--1151--2731Chr09:20521807..20521831 (25 bp)
AAGAACGCCTCCAAAGATCATCGCT
LOC_Os09g35670
Os.18156.1.S1_at--528--6431Chr09:20521822..20521846 (25 bp)
GATCATCGCTACATGCCATATCGAA
LOC_Os09g35670
Os.18156.1.S1_at--446--9771Chr09:20521864..20521888 (25 bp)
TAATGATGTCTCTCAAGCTGCCTTT
LOC_Os09g35670
Os.18156.1.S1_at--949--4771Chr09:20521880..20521904 (25 bp)
GCTGCCTTTAGCTTGATTCTTTCAT
LOC_Os09g35670
Os.18156.1.S1_at--555--111Chr09:20521895..20521919 (25 bp)
ATTCTTTCATGATCCACTGGTCCAG
LOC_Os09g35670
Os.18156.1.S1_at--922--1631Chr09:20521918..20521942 (25 bp)
AGCGTCCTGTACAACCTAGAGCGAA
LOC_Os09g35670
Os.18156.1.S1_at--801--1371Chr09:20521935..20521959 (25 bp)
AGAGCGAAAGCTATCCATGGACGTT
LOC_Os09g35670
Os.18156.1.S1_at--919--6551Chr09:20521979..20522003 (25 bp)
GATTACTGATAACCACAAGCTGTTG
LOC_Os09g35670
Target Sequence 
GAGGTCTCATCCTAAGAAGAACGTTGAGTCAGAGATTCTGCGTGAACATNTTAAGAAAGAGAGGGAAGCAACAAAGACTG
GAAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTACAATGAGCTCAAGGAGGCA
GGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAA
TGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACA
ACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis