Browse Element(s) Details


Os.51065.1.S1_at

Description gb:AK105833.1
DB_XREF= gi:32991042
TID=Os.51065.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E09, full insert sequence.
FL= gb:AK060485.1 gb:AK105833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3563011/11BAG domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35600OsAffx.30142.1.S1_x_at11/119+20469341..20470966MATE efflux family protein, expressed
LOC_Os09g35609NANA9+20473040..20473203NA
LOC_Os09g35620NANA9+20485235..20486071hypothetical protein
LOC_Os09g35630Os.51065.1.S1_at11/119+20493593..20496430BAG domain-containing protein, putative, expressed
LOC_Os09g35640NANA9+20500280..20500567hypothetical protein
LOC_Os09g35650Os.46012.2.S1_x_at7/119+20506068..20507554retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35650Os.27088.1.A1_x_at4/119+20506068..20507554retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35650Os.46012.3.S1_x_at2/119+20506068..20507554retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35650Os.54691.1.S1_x_at1/119+20506068..20507554retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35660NANA9+20509216..20513394retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35670Os.18156.1.S1_at11/119+20518764..20522095expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006915biological_processapoptosis
GO:0042981biological_processregulation of apoptosis
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51065.1.S1_at--276--3971Chr09:20494488..20494512 (25 bp)
CGGTTCGATTGGGAGCTCTTCTAGC
LOC_Os09g35630
Os.51065.1.S1_at--777--6251Chr09:20494433..20494457 (25 bp)
GATGGGTACACTACTCTACACTACA
LOC_Os09g35630
Os.51065.1.S1_at--966--2011Chr09:20494404..20494428 (25 bp)
ACTACACACTTCACCTTTTCTTTGT
LOC_Os09g35630
Os.51065.1.S1_at--237--10391Chr09:20494389..20494413 (25 bp)
TTTTCTTTGTCCATTCATCTCGTGA
LOC_Os09g35630
Os.51065.1.S1_at--400--8911Chr09:20494367..20494391 (25 bp)
TGAGCTCATTCGATCGGTCGCACTA
LOC_Os09g35630
Os.51065.1.S1_at--303--7231Chr09:20494351..20494375 (25 bp)
GTCGCACTAGCACCTGATCGATCAG
LOC_Os09g35630
Os.51065.1.S1_at--748--1651Chr09:20494325..20494349 (25 bp)
AGCGCTCGCCATTGTTTCTTTGATT
LOC_Os09g35630
Os.51065.1.S1_at--803--3511Chr09:20494264..20494288 (25 bp)
CATGTTCCTTTTTTCATTTCGAGAG
LOC_Os09g35630
Os.51065.1.S1_at--985--6111Chr09:20494197..20494221 (25 bp)
GAGTGTGTTCAGTACGTATGTCATC
LOC_Os09g35630
Os.51065.1.S1_at--987--6911Chr09:20494182..20494206 (25 bp)
GTATGTCATCACTCAAGTCAGTTCA
LOC_Os09g35630
Os.51065.1.S1_at--125--5791Chr09:20494100..20494124 (25 bp)
GACGAAGAATTTTCCGGTGACACTA
LOC_Os09g35630
Target Sequence 
CGGTTCGATTGGGAGCTCTTCTAGCTCGCTCTCGCTCTCCCTCTCCTCCTCCTCCGATGGGTACACTACTCTACACTACA
CTACACTACACACTTCACCTTTTCTTTGTCCATTCATCTCGTGAGCTCATTCGATCGGTCGCACTAGCACCTGATCGATC
AGCAGCGCTCGCCATTGTTTCTTTGATTTCTTCTGTTCATTCTTCCTCTTCTTTCTTTTTTCTTCATGTTCCTTTTTTCA
TTTCGAGAGTATATCTACAAAAACAAAAAAGAAGAAACACCATGGGTGATCGAGTGTGTTCAGTACGTATGTCATCACTC
AAGTCAGTTCATCAATCCAATGCATGGTCAGTCACACAGCCAAAAAAGAAAAAAGTGGGTGGTATCATGACGAAGAATTT
TCCGGTGACACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis