Browse Element(s) Details


OsAffx.30142.1.S1_x_at

Description tigr:9637.m02984
TID=OsAffx.30142.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MATE efflux family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3560011/11MATE efflux family protein, expressed
LOC_Os01g596601/11Transcription factor GAMYB, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35580OsAffx.4557.1.S1_s_at1/119+20450238..20450736hypothetical protein
LOC_Os09g35590OsAffx.6484.1.S1_at11/119+20456609..20457019hypothetical protein
LOC_Os09g35600OsAffx.30142.1.S1_x_at11/119+20469341..20470966MATE efflux family protein, expressed
LOC_Os09g35609NANA9+20473040..20473203NA
LOC_Os09g35620NANA9+20485235..20486071hypothetical protein
LOC_Os09g35630Os.51065.1.S1_at11/119+20493593..20496430BAG domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009740biological_processgibberellic acid mediated signaling
GO:0045449biological_processregulation of transcription
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30142.1.S1_x_at--545--4791Chr09:20469833..20469857 (25 bp)
GCTCGGGATCGTGGCGTTCGGGTTC
LOC_Os09g35600
OsAffx.30142.1.S1_x_at--807--7651Chr09:20469816..20469840 (25 bp)
TCGGGTTCGCGGTGTCCGTGAGGGC
LOC_Os09g35600
OsAffx.30142.1.S1_x_at--52--10512Chr01:34836397..34836416 (20 bp)
TTCACGGCGGAGGACGCCATCCTGA
LOC_Os01g59660
OsAffx.30142.1.S1_x_at--334--6171Chr09:20469641..20469665 (25 bp)
GAGGATCAACGTGGCGGCGTTCTAC
LOC_Os09g35600
OsAffx.30142.1.S1_x_at--482--3791Chr09:20469526..20469550 (25 bp)
CTCGTCTGCGCGTGGCTGATGCTGC
LOC_Os09g35600
OsAffx.30142.1.S1_x_at--297--9071Chr09:20469495..20469519 (25 bp)
TGCTGGGCACCGACTGGGCGGAGCA
LOC_Os09g35600
OsAffx.30142.1.S1_x_at--379--8471Chr09:20469420..20469444 (25 bp)
TGGCCGCCGTCATTGTCGACGACGA
LOC_Os09g35600
OsAffx.30142.1.S1_x_at--93--5791Chr09:20469403..20469427 (25 bp)
GACGACGACAAAGCCAAGCAGCATG
LOC_Os09g35600
OsAffx.30142.1.S1_x_at--635--4391Chr09:20469391..20469415 (25 bp)
GCCAAGCAGCATGCAGAAATGGACA
LOC_Os09g35600
OsAffx.30142.1.S1_x_at--649--3271Chr09:20469378..20469402 (25 bp)
CAGAAATGGACAAACCGCAACAGGT
LOC_Os09g35600
OsAffx.30142.1.S1_x_at--722--8131Chr09:20469371..20469395 (25 bp)
GGACAAACCGCAACAGGTTGACAAC
LOC_Os09g35600
Target Sequence 
GCTCGGGATCGTGGCGTTCGGGTTCGCGGTGTCCGTGAGGGCGGCGTGGGCGCGGATGTTCACGGCGGAGGACGCCATCC
TGAGGCTGGCGGCGGCGGCGCTGCCGCTGCTGGGCGCCGCCGAGCTGGGGAACTGCCCGCAGACGGCCGGGTGTGGCGTG
CTGCGCGGCAGCGCGCGGCCGGAGAGGGCGGCGAGGATCAACGTGGCGGCGTTCTACGGCGTCGGGATGCCGGTGGCGCT
GGCGCTGGCGTTCTGGCCCGCGGGGCTGGACTTCCGGGGGATGTGGGGCGGCATGCTCGCCGCGCAGCTCGTCTGCGCGT
GGCTGATGCTGCGCGCCGTGCTGGGCACCGACTGGGCGGAGCAGGCGGAGCGCGCGCGCGAGCTCACCGGCGGCGGCGAC
GGCTACGCCGCCGTGGCCGCCGTCATTGTCGACGACGACAAAGCCAAGCAGCATGCAGAAATGGACAAACCGCAACAGGT
TGACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30142.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis