Browse Element(s) Details


OsAffx.6484.1.S1_at

Description tigr:9637.m02983
TID=OsAffx.6484.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3559011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35560OsAffx.17998.1.S1_at11/119+20434121..20434514hypothetical protein
LOC_Os09g35570NANA9+20435985..20439435hypothetical protein
LOC_Os09g35580OsAffx.4557.1.S1_s_at1/119+20450238..20450736hypothetical protein
LOC_Os09g35590OsAffx.6484.1.S1_at11/119+20456609..20457019hypothetical protein
LOC_Os09g35600OsAffx.30142.1.S1_x_at11/119+20469341..20470966MATE efflux family protein, expressed
LOC_Os09g35609NANA9+20473040..20473203NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6484.1.S1_at--1112--1791Chr09:20456651..20456675 (25 bp)
ACCCCAACATATTTCCTGTCTACTA
LOC_Os09g35590
OsAffx.6484.1.S1_at--146--211Chr09:20456659..20456683 (25 bp)
ATATTTCCTGTCTACTAACCACTAC
LOC_Os09g35590
OsAffx.6484.1.S1_at--172--8671Chr09:20456667..20456691 (25 bp)
TGTCTACTAACCACTACGGGTCTGA
LOC_Os09g35590
OsAffx.6484.1.S1_at--678--2631Chr09:20456675..20456699 (25 bp)
AACCACTACGGGTCTGACATTCCCA
LOC_Os09g35590
OsAffx.6484.1.S1_at--406--7271Chr09:20456756..20456780 (25 bp)
GTCCACCGCTACTATTGGTCTGCTA
LOC_Os09g35590
OsAffx.6484.1.S1_at--467--9891Chr09:20456765..20456789 (25 bp)
TACTATTGGTCTGCTATCTCCCATT
LOC_Os09g35590
OsAffx.6484.1.S1_at--688--10231Chr09:20456768..20456792 (25 bp)
TATTGGTCTGCTATCTCCCATTCAC
LOC_Os09g35590
OsAffx.6484.1.S1_at--831--4191Chr09:20456822..20456846 (25 bp)
CCCGAAATCCTAATTCTTAGATTCT
LOC_Os09g35590
OsAffx.6484.1.S1_at--256--3671Chr09:20456837..20456861 (25 bp)
CTTAGATTCTTTATCGGGATTGCTA
LOC_Os09g35590
OsAffx.6484.1.S1_at--992--3055Chr09:20456891..20456915 (25 bp)
AATCTTACAGATTTTGAACCATTGG
LOC_Os09g35590
OsAffx.6484.1.S1_at--1074--1253Chr09:20456899..20456923 (25 bp)
AGATTTTGAACCATTGGATCCATGC
LOC_Os09g35590
Target Sequence 
ACCCCAACATATTTCCTGTCTACTAACCACTACGGGTCTGACATTCCCACCGCCAACCCATCCACCGTCCTCCTCCAACC
ACGTGGCTCCGCCTATACCCTTACCGTCCACCGCTACTATTGGTCTGCTATCTCCCATTCACCACTCTATCCTCCTCTAC
CACCTCCTAACCCCGAAATCCTAATTCTTAGATTCTTTATCGGGATTGCTATATGTCATTCGAATGAAATTTGGGGAAGA
AATCTTACAGATTTTGAACCATTGGATCCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis