Browse Element(s) Details


OsAffx.6486.1.S1_x_at

Description tigr:9637.m03001
TID=OsAffx.6486.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=OCL3 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3576010/11OCL3 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35720OsAffx.6485.1.S1_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35720OsAffx.6485.1.S1_x_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35730Os.7783.1.S1_at11/119+20549370..20552826membrane protein, putative, expressed
LOC_Os09g35740Os.41257.1.S1_at1/119+20557515..20558112hypothetical protein
LOC_Os09g35750OsAffx.30143.1.S1_at10/119+20559756..20561287hypothetical protein
LOC_Os09g35760Os.57414.1.S1_x_at11/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760OsAffx.6486.1.S1_x_at10/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760Os.57416.1.S1_x_at1/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35770Os.52917.1.S1_at1/119+20575896..20578473transposon protein, putative, Mutator sub-class
LOC_Os09g35780OsAffx.30144.1.S1_at11/119+20587366..20588179expressed protein
LOC_Os09g35790Os.11941.2.S1_at11/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790Os.54707.1.S1_x_at11/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790Os.11941.1.S1_at10/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790OsAffx.30145.1.S1_at7/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009913biological_processepidermal cell differentiation
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6486.1.S1_x_at--689--4591Chr09:20570074..20570098 (25 bp)
GCGACTGGGACATCCTTGCCAACGG
LOC_Os09g35760
OsAffx.6486.1.S1_x_at--1079--7251NONE
GTCCAAATGCCACAAGCGGGAACCA
NONE
OsAffx.6486.1.S1_x_at--494--4671Chr09:20568493..20568517 (25 bp)
GCGGGAACCAGAACAACATGCTGAT
LOC_Os09g35760
OsAffx.6486.1.S1_x_at--1013--2491Chr09:20568479..20568503 (25 bp)
AACATGCTGATCCTCCAGGAGACGT
LOC_Os09g35760
OsAffx.6486.1.S1_x_at--1111--3471Chr09:20568464..20568488 (25 bp)
CAGGAGACGTGCACCGACTCATCGG
LOC_Os09g35760
OsAffx.6486.1.S1_x_at--523--9951Chr09:20568425..20568449 (25 bp)
TACGCTCCGGTGGACGTGCAGTCGA
LOC_Os09g35760
OsAffx.6486.1.S1_x_at--565--651Chr09:20568401..20568425 (25 bp)
ATGCACGTCGTCATGAACGGCGGCG
LOC_Os09g35760
OsAffx.6486.1.S1_x_at--261--6951Chr09:20568244..20568268 (25 bp)
GTAGCAACAACACCGGGTCGCTGGT
LOC_Os09g35760
OsAffx.6486.1.S1_x_at--760--8471Chr09:20568214..20568238 (25 bp)
TGGCGTTCCAGATACTCGTCAACAA
LOC_Os09g35760
OsAffx.6486.1.S1_x_at--1051--5391Chr09:20568177..20568201 (25 bp)
GAAGCTCACCGTGGAGTCCGTCGAC
LOC_Os09g35760
OsAffx.6486.1.S1_x_at--808--8551Chr09:20568166..20568190 (25 bp)
TGGAGTCCGTCGACACCGTCAGCAA
LOC_Os09g35760
Target Sequence 
GCGACTGGGACATCCTTGCCAACGGCGAGGCCATGCAGGAGATGGACCACATCGCCAAGGGCCAGCACCACGGCAATGCC
GTCTCCCTCCTCCGTCCAAATGCCACAAGCGGGAACCAGAACAACATGCTGATCCTCCAGGAGACGTGCACCGACTCATC
GGGCTCCCTCGTCGTCTACGCTCCGGTGGACGTGCAGTCGATGCACGTCGTCATGAACGGCGGCGACTCCGCCTACGTCT
CCCTCCTCCCCTCCGGCTTCGCCATCCTCCCCGACGGCCACAACAATGGCGCCTCGCCGTCTCCGGCAGAGGTCGGCAGC
GGCGCCTCGCCGAACTCCGCCGCCGGTGGCGGTGGCGGTAGCAACAACACCGGGTCGCTGGTGACGGTGGCGTTCCAGAT
ACTCGTCAACAACCTGCCGACGGCGAAGCTCACCGTGGAGTCCGTCGACACCGTCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6486.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis