Browse Element(s) Details


Os.54707.1.S1_x_at

Description gb:AK106525.1
DB_XREF= gi:32991734
TID=Os.54707.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-D11, full insert sequence.
FL= gb:AK106525.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3579011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35760Os.57414.1.S1_x_at11/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760OsAffx.6486.1.S1_x_at10/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760Os.57416.1.S1_x_at1/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35770Os.52917.1.S1_at1/119+20575896..20578473transposon protein, putative, Mutator sub-class
LOC_Os09g35780OsAffx.30144.1.S1_at11/119+20587366..20588179expressed protein
LOC_Os09g35790Os.11941.2.S1_at11/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790Os.54707.1.S1_x_at11/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790Os.11941.1.S1_at10/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790OsAffx.30145.1.S1_at7/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35800Os.8507.1.S1_at11/119+20600134..20602522UDP-glucose 4-epimerase, putative, expressed
LOC_Os09g35810Os.8734.1.S1_a_at11/119+20605389..20608644NC domain-containing protein, putative, expressed
LOC_Os09g35820NANA9+20609072..20610125hypothetical protein
LOC_Os09g35830NANA9+20613276..20613862hypothetical protein
LOC_Os09g35840Os.24098.1.S1_a_at4/119+20619099..20621316RNA-binding protein, putative
LOC_Os09g35840Os.56892.1.S1_x_at4/119+20619099..20621316RNA-binding protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54707.1.S1_x_at--51--3531Chr09:20593684..20593708 (25 bp)
CATGAAGAAGCTCTGTAACAACATC
LOC_Os09g35790
Os.54707.1.S1_x_at--897--7651Chr09:20593608..20593632 (25 bp)
GGGATATCCTCCATAGCGAACTGCT
LOC_Os09g35790
Os.54707.1.S1_x_at--360--3571Chr09:20593597..20593621 (25 bp)
CATAGCGAACTGCTCCGGCGAGTCG
LOC_Os09g35790
Os.54707.1.S1_x_at--984--6471Chr09:20593534..20593558 (25 bp)
GATACTCGATCTAATGCCCTCGTGC
LOC_Os09g35790
Os.54707.1.S1_x_at--324--3551Chr09:20593426..20593450 (25 bp)
CATCGGCCTGAAGCGGACGCGAGAC
LOC_Os09g35790
Os.54707.1.S1_x_at--625--8751Chr09:20593229..20593253 (25 bp)
TGTACCACGCGGTCAGGCCCACTTG
LOC_Os09g35790
Os.54707.1.S1_x_at--113--7691Chr09:20593185..20593209 (25 bp)
GGGTCCGACCAAGACGGGTCCAGCT
LOC_Os09g35790
Os.54707.1.S1_x_at--136--2771Chr09:20593175..20593199 (25 bp)
AAGACGGGTCCAGCTCCAGGTGAGT
LOC_Os09g35790
Os.54707.1.S1_x_at--21--4211Chr09:20593144..20593168 (25 bp)
CCCCAACCCTGTAGAAGCTTCTAGA
LOC_Os09g35790
Os.54707.1.S1_x_at--928--1431Chr09:20593132..20593156 (25 bp)
AGAAGCTTCTAGACCCCTATATTAC
LOC_Os09g35790
Os.54707.1.S1_x_at--711--9991Chr09:20593123..20593147 (25 bp)
TAGACCCCTATATTACTTAATTGCC
LOC_Os09g35790
Target Sequence 
CATGAAGAAGCTCTGTAACAACATCCTCCTCCTCATGTCCAAGTACGCCGCCACCCAGCACGTGGAGGGCTCCGCGGGGA
TATCCTCCATAGCGAACTGCTCCGGCGAGTCGTCGGAGGCCGTTCCCCCGCCGCCGCCTCTCCCCCCGGCGATACTCGAT
CTAATGCCCTCGTGCCCCGCCCTGGCCACCGCCGCCGCCGCTGCGGGGCTCGCCATAGACGGCGAGCCCGACCCGAGCGC
GCGGCTGTTCGGCGTCTCCATCGGCCTGAAGCGGACGCGAGACGACGCCGCCGCCGCCGCCGACGAAGACGGCGGCGGCG
AGGATCAGGCCGAGCACGGCGGCGCGGACGTGAAGCCGGAGGCGGCGGATCCGCATCCCGCCGGCGGCGGCGGCGGAAGC
AGCACGGAGGCGTCGCCGGAGTCGCACCCGTGGCCCATATACCGGCCAACCCCCATGTACCACGCGGTCAGGCCCACTTG
CAACGGGCCGGACAGGGCCGGGTCCGACCAAGACGGGTCCAGCTCCAGGTGAGTTGGCCCCCCCAACCCTGTAGAAGCTT
CTAGACCCCTATATTACTTAATTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54707.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis