Browse Element(s) Details

Os.11941.1.S1_at

Description

gb:AK106545.1
DB_XREF= gi:32991754
TID=Os.11941.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F03, full insert sequence.
FL= gb:AK106545.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g35790	10/11	HSF-type DNA-binding domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g35760	Os.57414.1.S1_x_at	11/11	9	+	20568102..20573844	OCL3 protein, putative, expressed
LOC_Os09g35760	OsAffx.6486.1.S1_x_at	10/11	9	+	20568102..20573844	OCL3 protein, putative, expressed
LOC_Os09g35760	Os.57416.1.S1_x_at	1/11	9	+	20568102..20573844	OCL3 protein, putative, expressed
LOC_Os09g35770	Os.52917.1.S1_at	1/11	9	+	20575896..20578473	transposon protein, putative, Mutator sub-class
LOC_Os09g35780	OsAffx.30144.1.S1_at	11/11	9	+	20587366..20588179	expressed protein
LOC_Os09g35790	Os.11941.2.S1_at	11/11	9	+	20590771..20594662	HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790	Os.54707.1.S1_x_at	11/11	9	+	20590771..20594662	HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790	Os.11941.1.S1_at	10/11	9	+	20590771..20594662	HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790	OsAffx.30145.1.S1_at	7/11	9	+	20590771..20594662	HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35800	Os.8507.1.S1_at	11/11	9	+	20600134..20602522	UDP-glucose 4-epimerase, putative, expressed
LOC_Os09g35810	Os.8734.1.S1_a_at	11/11	9	+	20605389..20608644	NC domain-containing protein, putative, expressed
LOC_Os09g35820	NA	NA	9	+	20609072..20610125	hypothetical protein
LOC_Os09g35830	NA	NA	9	+	20613276..20613862	hypothetical protein
LOC_Os09g35840	Os.24098.1.S1_a_at	4/11	9	+	20619099..20621316	RNA-binding protein, putative
LOC_Os09g35840	Os.56892.1.S1_x_at	4/11	9	+	20619099..20621316	RNA-binding protein, putative

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Gene Ontology Classification

GO id	Type	Name
GO:0009408	biological_process	response to heat
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11941.1.S1_at--530--159	1	NONE	AGCTCCAGCCAAACGATGGGACCTG	NONE
Os.11941.1.S1_at--1058--809	1	Chr09:20591132..20591156 (25 bp)	GGACCTGGTGAATTCGACGATCTGC	LOC_Os09g35790
Os.11941.1.S1_at--714--739	1	Chr09:20591022..20591046 (25 bp)	GTGATGGCAGACAACAGCAAATGGT	LOC_Os09g35790
Os.11941.1.S1_at--633--229	1	Chr09:20591004..20591028 (25 bp)	AAATGGTGTTGTGATCCACGGAGGC	LOC_Os09g35790
Os.11941.1.S1_at--407--79	1	Chr09:20590964..20590988 (25 bp)	ATGGGTAGCTGGGACTAGTTCCAAT	LOC_Os09g35790
Os.11941.1.S1_at--851--863	1	Chr09:20590955..20590979 (25 bp)	TGGGACTAGTTCCAATTCTCCCTTT	LOC_Os09g35790
Os.11941.1.S1_at--473--353	1	Chr09:20590929..20590953 (25 bp)	CATCCTCTCGGGTTGCGGCGGAAAG	LOC_Os09g35790
Os.11941.1.S1_at--673--913	1	Chr09:20590916..20590940 (25 bp)	TGCGGCGGAAAGTTCAAGTCATCGT	LOC_Os09g35790
Os.11941.1.S1_at--463--983	1	Chr09:20590883..20590907 (25 bp)	TAAAGCTAACTCTTCAAGCTTTGTG	LOC_Os09g35790
Os.11941.1.S1_at--832--1083	1	Chr09:20590843..20590867 (25 bp)	TTGTGTGTTTTCCTCTGCATGAGGA	LOC_Os09g35790
Os.11941.1.S1_at--639--429	1	Chr09:20590832..20590856 (25 bp)	CCTCTGCATGAGGATTGGAGTCTAA	LOC_Os09g35790

Target Sequence

AGCTCCAGCCAAACGATGGGACCTGGTGAATTCGACGATCTGCAAAAGATGATGGTGGTGCAACAGNGCAACTTCGTGAT
GCACTGGGGACGCTCGGAATGCGGTAGTGGCGTAAGGGGTTTTGGATGGTGATGGCAGACAACAGCAAATGGTGTTGTGA
TCCACGGAGGCGGAGATGGTGCGGTGATGGGTAGCTGGGACTAGTTCCAATTCTCCCTTTCCATCCTCTCGGGTTGCGGC
GGAAAGTTCAAGTCATCGTTGAAGGTTTAAAGCTAACTCTTCAAGCTTTGTGTGTGTGTTGGTGTGTTTGTGTGTTTTCC
TCTGCATGAGGATTGGAGTCTAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis