Browse Element(s) Details


Os.51571.1.S1_x_at

Description gb:AK063091.1
DB_XREF= gi:32973109
TID=Os.51571.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-B02, full insert sequence.
FL= gb:AK063091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g266306/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26580OsAffx.20730.1.S1_x_at1/115+15363599..15366998retrotransposon protein, putative, unclassified
LOC_Os05g26580OsAffx.20733.1.S1_x_at1/115+15363599..15366998retrotransposon protein, putative, unclassified
LOC_Os05g26580OsAffx.8338.1.S1_x_at1/115+15363599..15366998retrotransposon protein, putative, unclassified
LOC_Os05g26580OsAffx.26113.1.S1_x_at1/115+15363599..15366998retrotransposon protein, putative, unclassified
LOC_Os05g26590Os.28943.1.S1_x_at3/115+15367814..15369833retrotransposon protein, putative, unclassified
LOC_Os05g26600Os.46610.1.A1_x_at3/115+15372605..15378721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26600Os.46314.2.S1_x_at2/115+15372605..15378721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26600OsAffx.3347.1.S1_at1/115+15372605..15378721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g26610NANA5+15383883..15384497hypothetical protein
LOC_Os05g26620Os.8502.7.S1_x_at8/115+15386427..15386879Prolamin PPROL 14 precursor, putative
LOC_Os05g26620Os.8502.5.S1_x_at6/115+15386427..15386879Prolamin PPROL 14 precursor, putative
LOC_Os05g26620Os.8502.4.S1_at2/115+15386427..15386879Prolamin PPROL 14 precursor, putative
LOC_Os05g26630Os.51571.1.S1_x_at6/115+15391672..15393502expressed protein
LOC_Os05g26640NANA5+15397547..15399409hypothetical protein
LOC_Os05g26649OsAffx.2606.1.S1_at1/115+15400130..15400822NA
LOC_Os05g26649OsAffx.8939.1.S1_x_at1/115+15400130..15400822NA
LOC_Os05g26660Os.53929.1.S1_at11/115+15404241..15410018EF hand family protein, expressed
LOC_Os05g26670OsAffx.27028.1.S1_at11/115+15413502..15414040hypothetical protein
LOC_Os05g26670Os.8626.2.S1_at2/115+15413502..15414040hypothetical protein
LOC_Os05g26670Os.8626.3.S1_s_at1/115+15413502..15414040hypothetical protein
LOC_Os05g26680NANA5+15416574..15418571retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51571.1.S1_x_at--978--7231Chr05:15393648..15393672 (25 bp)
GTCGCCAGTTGTTGTCGCCTCCAAC
NONE
Os.51571.1.S1_x_at--317--891Chr05:15393563..15393587 (25 bp)
AGGCCTAGGCCTCCAGATCTAGCGA
NONE
Os.51571.1.S1_x_at--723--4291Chr05:15393536..15393560 (25 bp)
CCATCCTTCCCGCTAGTGGAACTAG
NONE
Os.51571.1.S1_x_at--128--5471Chr05:15393518..15393542 (25 bp)
GAACTAGCTAGATAGAGCGGGCCGA
NONE
Os.51571.1.S1_x_at--513--3991Chr05:15393501..15393525 (25 bp)
CGGGCCGAGTACAAGCGACGACGAT
NONE
Os.51571.1.S1_x_at--123--6411Chr05:15393223..15393247 (25 bp)
GATCTGGCGCCACCGAGCCTCAGGA
LOC_Os05g26630
Os.51571.1.S1_x_at--361--3951Chr05:15393164..15393188 (25 bp)
CGGCAGCGACAGAGGGAGCAAATCT
LOC_Os05g26630
Os.51571.1.S1_x_at--1025--6111Chr05:15393153..15393177 (25 bp)
GAGGGAGCAAATCTGGCACCGACCA
LOC_Os05g26630
Os.51571.1.S1_x_at--580--9431Chr05:15393115..15393139 (25 bp)
TCGGGAGCACAAATCCTTCCTTACC
LOC_Os05g26630
Os.51571.1.S1_x_at--273--3671Chr05:15393096..15393120 (25 bp)
CTTACCTCGTGTTTCGTGATGTGAT
LOC_Os05g26630
Os.51571.1.S1_x_at--172--6271Chr05:15393047..15393071 (25 bp)
GATGTGGAATTTATGCTCTGTGATA
LOC_Os05g26630
Target Sequence 
GTCGCCAGTTGTTGTCGCCTCCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGTACCGCTGTCACATCGGCCAA
CGGGGAGGCCTAGGCCTCCAGATCTAGCGACCCCATCCTTCCCGCTAGTGGAACTAGCTAGATAGAGCGGGCCGAGTACA
AGCGACGACGATGAGGGAGAGGGTGGCTGCGCGGGGAAGGGGCCGGCGCGGCGCAGGGAAGGAGGTGGTGCCGACGAGCC
TTGGGTGAGTGGATCTGGCGCCACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGAC
AGAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCTTACCTCGTGTTTCGTGATGT
GATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTATGCTCTGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51571.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis