Description |
gb:NM_186946.1 DB_XREF=
gi:34900977 GEN=P0046D03.9
TID=Os.46610.1 CNT=3 FEA=mRNA TIER=ConsEnd STK=0
UG=Os.46610 (NCBI UniGene Cluster) UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0046D03.9), mRNA DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0046D03.9), mRNA. REP_ORG=O. sativa |
Associated TIGR Gene Locus | TIGR Locus | Matching Probes | Description |
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LOC_Os07g15700 | 11/11 | hypothetical protein | LOC_Os07g29170 | 4/11 | transposon protein, putative, CACTA, En/Spm sub-class, expressed | LOC_Os03g32380 | 4/11 | retrotransposon protein, putative, Ty3-gypsy subclass | LOC_Os05g26600 | 3/11 | retrotransposon protein, putative, Ty3-gypsy subclass | LOC_Os05g20630 | 3/11 | hypothetical protein | LOC_Os05g24390 | 3/11 | hypothetical protein | LOC_Os08g29230 | 3/11 | hypothetical protein | LOC_Os05g24360 | 3/11 | transposon protein, putative, CACTA, En/Spm sub-class | LOC_Os07g16400 | 2/11 | retrotransposon protein, putative, Ty3-gypsy subclass | LOC_Os07g27834 | 2/11 | retrotransposon protein, putative, Ty3-gypsy subclass | LOC_Os12g10440 | 2/11 | hypothetical protein | LOC_Os06g30150 | 2/11 | transposon protein, putative, unclassified | LOC_Os04g38070 | 1/11 | retrotransposon protein, putative, unclassified | LOC_Os05g20620 | 1/11 | expressed protein | LOC_Os03g35950 | 1/11 | expressed protein | LOC_Os10g06860 | 1/11 | hypothetical protein | LOC_Os06g03350 | 1/11 | hypothetical protein | LOC_Os10g03310 | 1/11 | retrotransposon protein, putative, Ty1-copia subclass | LOC_Os06g25960 | 1/11 | hypothetical protein | LOC_Os10g24710 | 1/11 | expressed protein | LOC_Os08g05220 | 1/11 | retrotransposon protein, putative, unclassified | LOC_Os05g03650 | 1/11 | retrotransposon protein, putative, unclassified | LOC_Os09g03180 | 1/11 | transposon protein, putative, Mutator sub-class | LOC_Os07g25270 | 1/11 | retrotransposon protein, putative, Ty3-gypsy subclass | LOC_Os09g06430 | 1/11 | retrotransposon protein, putative, Ty3-gypsy subclass | LOC_Os04g07760 | 1/11 | retrotransposon protein, putative, unclassified | LOC_Os12g21600 | 1/11 | retrotransposon protein, putative, Ty3-gypsy subclass |
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Gene Context (flanking 25kb) |
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Gene Ontology Classification | GO id | Type | Name |
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NONE | NONE | NONE |
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Probe Info |
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Target Sequence | CGCAAGAAATCGATCCGGGAAATCAAAAACTCGGTTTTGGAGATAAACTCGAAAACGAGTTTGATTCGGATAAGATACTC
AACGATTTGCTCCGATTTTTGGGGGGTAAAGATAGAGGAGGATAAGAGGAATATTTCCCCTCAACTAAATTGGAAAAAGG
AGCAACGGGGAGGCGAGATTTGGAAGGAAGAGGCGGCGGCACAGGGCACAGCACGGGCGGCTCGGCTCTGTCCAGAGCTG
GAAGATGAACAGTGCCAGGGAGGGAAAGTAGACTTTCTGCTGGGCTTCTACTTCCAAAGACTGATTAAAGGAGGGACAAA
AGC BLASTn GenBank NR |
Expression Profiles | Gene Chronologer Gene Chronologer (Grouped) Heterosis View Gene Correlator (coexpression analysis) SALK RiceGE Rice MPSS RiceArray Coexpression Database |
Miscellaneous | SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: Putative homologies in ricePutative homologies in arabidopsis |