Browse Element(s) Details


OsAffx.22421.3.S1_at

Description gb:NM_186943.1
DB_XREF= gi:34900971
GEN=P0046D03.6
TID=OsAffx.22421.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) similar to transposase (P0046D03.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1569011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g185201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g193101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g355201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g304501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15660OsAffx.10155.1.S1_x_at11/117+9089056..9093538retrotransposon protein, putative, LINE subclass
LOC_Os07g15660OsAffx.10155.1.S1_at11/117+9089056..9093538retrotransposon protein, putative, LINE subclass
LOC_Os07g15670Os.25507.1.S1_at10/117+9097402..9101211expressed protein
LOC_Os07g15680Os.5744.1.S1_at11/117+9103800..9111224Phospholipase D beta 1, putative, expressed
LOC_Os07g15690OsAffx.22421.3.S1_at11/117+9115421..9118253transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15690OsAffx.22421.2.S1_at2/117+9115421..9118253transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15700Os.46610.1.A1_x_at11/117+9123209..9123736hypothetical protein
LOC_Os07g15710Os.27435.1.S1_x_at3/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.51856.1.S2_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.46334.1.S1_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.51856.1.S2_x_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.46334.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710OsAffx.22896.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710OsAffx.940.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15720NANA7+9135235..9135654hypothetical protein
LOC_Os07g15730OsAffx.28465.1.S1_at11/117+9135942..9136301hypothetical protein
LOC_Os07g15730OsAffx.16451.1.S1_x_at1/117+9135942..9136301hypothetical protein
LOC_Os07g15740OsAffx.22699.1.S1_x_at1/117+9136573..9140791retrotransposon protein, putative, unclassified
LOC_Os07g15750NANA7+9141074..9142072retrotransposon protein, putative, unclassified
LOC_Os07g15760OsAffx.3761.1.S1_x_at1/117+9142468..9145663hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22421.3.S1_at--596--5331Chr07:9117490..9117514 (25 bp)
GAAGTCGTATGTTCGGAACAGAGCA
LOC_Os07g15690
OsAffx.22421.3.S1_at--935--9871Chr07:9117578..9117602 (25 bp)
TACATGGCCGAGATTGATCCTATCG
LOC_Os07g15690
OsAffx.22421.3.S1_at--855--8411Chr07:9117583..9117607 (25 bp)
GGCCGAGATTGATCCTATCGGAGTT
LOC_Os07g15690
OsAffx.22421.3.S1_at--97--2931Chr07:9117624..9117704 (25 bp)
AAGGAAGGTTGCAGGCTCGTTTCGC
LOC_Os07g15690
OsAffx.22421.3.S1_at--1144--2891Chr07:9117689..9117708 (20 bp)
AAGGTTGCAGGCTCGTTTCGCAGTG
LOC_Os07g15690
OsAffx.22421.3.S1_at--336--5152Chr11:20324306..20324330 (25 bp)
GCAACATATGGTTGAAGTAACCCCA
LOC_Os11g35520
OsAffx.22421.3.S1_at--61--10472Chr11:10418666..10418686 (21 bp)
TTGAAGTAACCCCATACTTTGATGA
LOC_Os11g18520
OsAffx.22421.3.S1_at--761--9631Chr07:9118020..9118044 (25 bp)
TCAGGCTAGATCAAGCACATACTAC
LOC_Os07g15690
OsAffx.22421.3.S1_at--388--3572Chr07:9118025..9118049 (25 bp)
CTAGATCAAGCACATACTACGGCCG
LOC_Os07g15690
OsAffx.22421.3.S1_at--896--5472Chr11:11048284..11048307 (24 bp)
GAACTACCTGAACTTCAAAGTCCCG
LOC_Os11g19310
OsAffx.22421.3.S1_at--432--3711Chr07:9118074..9118098 (25 bp)
CTACCTGAACTTCAAAGTCCCGTTG
LOC_Os07g15690
Target Sequence 
GAAGTCGTATGTTCGGAACAGAGCAAAACCAGAGGGGAGCATCATTGAAGGTTACACGACCGAGGAGGCCATTGAGTTCT
GTATCGATTACATGGCCGAGATTGATCCTATCGGAGTTCCTGCGTCTCGCCACGAAGGAAGGTTGCAGGCTCGTTTCGCA
GTGCTGCAACATATGGTTGAAGTAACCCCATACTTTGATGAGCATTTAGCGAAGGTCCGACGGGACAATATTGGTCGATC
AGATATTTGGATCAACAGAGAACATGGTTCTTGCTTCAATGAATGGTTCAAGGATCGTGTAGCATGGTCGACCGATGGCG
CAAGTGAGATATTACAAAGGTTGGCAAGGGGTCCATCTTGGGATGTTGACACATGGCAAGGGTACGATATCAATGGATAC
ACATTTTACACCGTCACACAAGATGAGAAAAGCACAGTGCAAAACAGTGGAGTCCGTATAGATGCATATCAGGATCAGGC
TAGATCAAGCACATACTACGGCCGCATAGAGCAGATATGGGAGCTGAACTACCTGAACTTCAAAGTCCCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22421.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis