Browse Element(s) Details


Os.51856.1.S2_at

Description gb:AK064432.1
DB_XREF= gi:32974450
TID=Os.51856.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-D03, full insert sequence.
FL= gb:AK064432.1 gb:AK064095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2048011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g134303/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g174902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g157102/11transposon protein, putative, unclassified
LOC_Os11g263002/11transposon protein, putative, unclassified
LOC_Os12g353801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g228301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g097161/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g261101/11hypothetical protein
LOC_Os11g193301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20450Os.7350.1.S1_at11/1110+9961832..9964513MATE efflux family protein, expressed
LOC_Os10g20460OsAffx.30461.1.S1_at10/1110+9965696..9967221hypothetical protein
LOC_Os10g20470Os.5049.1.S1_at11/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20470OsAffx.30725.5.S1_x_at1/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20480Os.51856.1.S2_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S2_x_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S1_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_x_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.27435.1.S1_x_at3/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20490OsAffx.22421.1.S1_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.4.S1_x_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.16244.1.S1_x_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.2.S1_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20500OsAffx.20487.1.S1_s_at11/1110+9998558..10000348hypothetical protein
LOC_Os10g20500OsAffx.20487.2.S1_at10/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.52284.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.29966.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20510Os.25521.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510OsAffx.18309.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_x_at10/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_at9/1110+10005999..10011288expressed protein
LOC_Os10g20520OsAffx.30462.1.S1_at11/1110+10012486..10012787hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51856.1.S2_at--395--1838Chr12:19334441..19334465 (25 bp)
ACGCAGGTAGGAGATAGAGGTATAT
NONE
Os.51856.1.S2_at--812--6157Chr12:21478549..21478573 (25 bp)
GAGGTATATCAAACCATCAGAGAAT
NONE
Os.51856.1.S2_at--107--2378Chr12:21478559..21478583 (25 bp)
AAACCATCAGAGAATGTGTGTAGAT
NONE
Os.51856.1.S2_at--718--7471Chr10:9989166..9989190 (25 bp)
GTGTGTAGATGCAATTTTCTGTTTA
LOC_Os10g20480
Os.51856.1.S2_at--375--8751Chr10:9989125..9989149 (25 bp)
TGTACAACAATCACATAGGACATGT
LOC_Os10g20480
Os.51856.1.S2_at--889--3271Chr10:9989121..9989145 (25 bp)
CAACAATCACATAGGACATGTCGTA
LOC_Os10g20480
Os.51856.1.S2_at--448--6491Chr10:9988983..9989007 (25 bp)
GATATCCGACGGCTTCGATGAAAGC
LOC_Os10g20480
Os.51856.1.S2_at--138--5751Chr10:9988976..9989000 (25 bp)
GACGGCTTCGATGAAAGCTGTCAAA
LOC_Os10g20480
Os.51856.1.S2_at--305--8151Chr10:9988841..9988865 (25 bp)
GGAAAGCTTTCAATACCCTACAGGC
LOC_Os10g20480
Os.51856.1.S2_at--126--2711Chr10:9988838..9988862 (25 bp)
AAGCTTTCAATACCCTACAGGCAGG
LOC_Os10g20480
Os.51856.1.S2_at--128--3075Chr12:21478909..21478941 (25 bp)
CAATACCCTACAGGCAGGACTCAAG
LOC_Os12g35380
Target Sequence 
ACGCAGGTAGGAGATAGAGGTATATCAAACCATCAGAGAATGTGTGTAGATGCAATTTTCTGTTTAAAAAGTACTTTCTT
CCTGTACAACAATCACATAGGACATGTCGTANCAAGGCGAACCAATGTCGACGACCACTACTGGGACTACTTCGAGCCAG
AATCCTAGGACCCAGAATAAGATTCCTAAGTAAGTCTACACCATAACAGAGGTGGACGATATTGGATATCCGACGGCTTC
GATGAAAGCTGTCAAAAAGTTCCCTACGATATGTGGAGTCCTAGGGAGGCGGAACTTCACTATTCTGAAGGACCACATCG
ATCTGGTCCCTCAAGAAGAAAAAGAAGAGGCCTGGAGGCAGTTCAAGGAAAGCTTTCAATACCCTACAGGCAGGACTCAA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51856.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis