Browse Element(s) Details


Os.25521.1.S1_at

Description gb:AK120994.1
DB_XREF= gi:37990617
TID=Os.25521.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0045C13.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043O20, full insert sequence.
FL= gb:AK120994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2051011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20480Os.51856.1.S2_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S2_x_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S1_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_x_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.27435.1.S1_x_at3/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20490OsAffx.22421.1.S1_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.4.S1_x_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.16244.1.S1_x_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.2.S1_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20500OsAffx.20487.1.S1_s_at11/1110+9998558..10000348hypothetical protein
LOC_Os10g20500OsAffx.20487.2.S1_at10/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.52284.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.29966.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20510Os.25521.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510OsAffx.18309.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_x_at10/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_at9/1110+10005999..10011288expressed protein
LOC_Os10g20520OsAffx.30462.1.S1_at11/1110+10012486..10012787hypothetical protein
LOC_Os10g20530OsAffx.20486.1.S1_at11/1110+10018428..10019190hypothetical protein
LOC_Os10g20540OsAffx.20485.1.S1_at11/1110+10022517..10025503hypothetical protein
LOC_Os10g20550Os.9663.1.S1_at10/1110+10026433..10027152expressed protein
LOC_Os10g20560OsAffx.6710.1.S1_at10/1110+10028725..10029871hypothetical protein
LOC_Os10g20570NANA10+10035111..10039348retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25521.1.S1_at--707--7191Chr10:10007327..10007351 (25 bp)
GTCGGTATTTATTAGCTGGATCAGT
LOC_Os10g20510
Os.25521.1.S1_at--607--10591Chr10:10007428..10007452 (25 bp)
TTCTGTTGCGTAGGTTTTGTCGAAC
LOC_Os10g20510
Os.25521.1.S1_at--913--10211Chr10:10007485..10007509 (25 bp)
TATTCTTCTGTGTTGTCGATGTGCA
LOC_Os10g20510
Os.25521.1.S1_at--1148--7031Chr10:10007516..10007540 (25 bp)
GTAAATACATACTCATTCCGAATCG
LOC_Os10g20510
Os.25521.1.S1_at--1058--1011Chr10:10007563..10007587 (25 bp)
AGGTATTCTCACCATTGTCGATCCT
LOC_Os10g20510
Os.25521.1.S1_at--538--6371Chr10:10007582..10007606 (25 bp)
GATCCTCAATTTGTCACATCCTGTT
LOC_Os10g20510
Os.25521.1.S1_at--543--3691Chr10:10007623..10007647 (25 bp)
CTATTCTGTACATCGCTTCATTGCA
LOC_Os10g20510
Os.25521.1.S1_at--193--5871Chr10:10007669..10007693 (25 bp)
GAGCCACTGGTAATGCAATCTGTAG
LOC_Os10g20510
Os.25521.1.S1_at--579--8291Chr10:10007730..10007754 (25 bp)
GGCTAGTAATACATTCCTGACAGAA
LOC_Os10g20510
Os.25521.1.S1_at--583--5371Chr10:10007805..10007829 (25 bp)
GAAGAACATTTCCTAGCCAGTGCCT
LOC_Os10g20510
Os.25521.1.S1_at--119--2871Chr10:10007890..10007914 (25 bp)
AAGTGCTGTATATCCCATTGTTCAT
LOC_Os10g20510
Target Sequence 
GTCGGTATTTATTAGCTGGATCAGTAAGAATGATTGCACATTGCATTTGATGATTTGGTTAGTAGTTGGTATCATGTCTT
GAGTATATATTGACCTGACAATTCTGTTGCGTAGGTTTTGTCGAACTATAGTACACAATATTAAGGATATGTTATTTATA
TTCTTCTGTGTTGTCGATGTGCAATATTTGTAAATACATACTCATTCCGAATCGAGAACCATATGATTCAGAGAAAAGGT
ATTCTCACCATTGTCGATCCTCAATTTGTCACATCCTGTTATAATTATTATTACTGCTATTCTGTACATCGCTTCATTGC
ACCATCATCTTCAATATATGTAGAGCCACTGGTAATGCAATCTGTAGATGTTTTGTCGGTCATATTTTGAAAAATAGAAA
CTAGGCTAGTAATACATTCCTGACAGAAATGCAGGAAAAGTATTATTTGTAACTCAAATTAAAAGATGAATTGTGATTGA
AGAACATTTCCTAGCCAGTGCCTGCCATAAACAGGAAACTAAAATGTAAAATAAAAATTTAAACACTTGAATTAAACAAA
AACAAGTGCTGTATATCCCATTGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis