Browse Element(s) Details


OsAffx.20487.1.S1_s_at

Description gb:NM_195897.1
DB_XREF= gi:37533153
TID=OsAffx.20487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0045C13.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2050011/11hypothetical protein
LOC_Os03g043603/11phosphate:H+ symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20480Os.51856.1.S2_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S2_x_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S1_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_x_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.27435.1.S1_x_at3/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20490OsAffx.22421.1.S1_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.4.S1_x_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.16244.1.S1_x_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.2.S1_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20500OsAffx.20487.1.S1_s_at11/1110+9998558..10000348hypothetical protein
LOC_Os10g20500OsAffx.20487.2.S1_at10/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.52284.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.29966.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20510Os.25521.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510OsAffx.18309.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_x_at10/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_at9/1110+10005999..10011288expressed protein
LOC_Os10g20520OsAffx.30462.1.S1_at11/1110+10012486..10012787hypothetical protein
LOC_Os10g20530OsAffx.20486.1.S1_at11/1110+10018428..10019190hypothetical protein
LOC_Os10g20540OsAffx.20485.1.S1_at11/1110+10022517..10025503hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20487.1.S1_s_at--955--4631Chr10:10000231..10000255 (25 bp)
GCGTTGCTACATGCATACCTTCATG
LOC_Os10g20500
OsAffx.20487.1.S1_s_at--1084--411Chr10:10000221..10000245 (25 bp)
ATGCATACCTTCATGGGCGGCCAAA
LOC_Os10g20500
OsAffx.20487.1.S1_s_at--411--4951Chr10:10000219..10000243 (25 bp)
GCATACCTTCATGGGCGGCCAAAGG
LOC_Os10g20500
OsAffx.20487.1.S1_s_at--567--9212Chr10:10000120..10000144 (25 bp)
TCCAAGGTGCTCCAGGTGAAGATCA
LOC_Os10g20500
OsAffx.20487.1.S1_s_at--863--9212Chr10:10000110..10000134 (25 bp)
TCCAGGTGAAGATCACGGCGGAGCA
LOC_Os10g20500
OsAffx.20487.1.S1_s_at--101--5931Chr10:10000090..10000114 (25 bp)
GAGCAGGCGGAGATGGCCTCGCTGG
LOC_Os10g20500
OsAffx.20487.1.S1_s_at--82--8591Chr10:10000068..10000092 (25 bp)
TGGTCGACAAGCCCTTCACCAACAA
LOC_Os10g20500
OsAffx.20487.1.S1_s_at--375--7672Chr10:10000003..10000027 (25 bp)
GGGTTCCACCTCCTGGGCACGACGT
LOC_Os10g20500
OsAffx.20487.1.S1_s_at--868--4091Chr10:9999978..10000002 (25 bp)
CGACGTGGCTCCTGGACGCGGTCCT
LOC_Os10g20500
OsAffx.20487.1.S1_s_at--228--10651Chr10:9999884..9999908 (25 bp)
TTCCTCCTTAACAACGGCGGCAGTA
LOC_Os10g20500
OsAffx.20487.1.S1_s_at--97--3271Chr10:9999873..9999897 (25 bp)
CAACGGCGGCAGTAGAGGCGGTCCA
LOC_Os10g20500
Target Sequence 
GCGTTGCTACATGCATACCTTCATGGGCGGCCAAAGGCGAGGATGGAGCTCGGCCTCCTCCTGGAGCCTGGCCCGGGGGC
TTCGAACGCGGATCTCGCCGCGGCCGACATGTCCAAGGTGCTCCAGGTGAAGATCACGGCGGAGCAGGCGGAGATGGCCT
CGCTGGTCGACAAGCCCTTCACCAACAAGCCCTTCGGCCTCTTCTCCGGCGAGTTCGCGCGGCGCCACGGGTTCCACCTC
CTGGGCACGACGTCGACGTGGCTCCTGGACGCGGTCCTGCTCCTCTCACGGCATCTCCTCGCAGCCTTCCTTTCTTCCTC
CTTAACAACGGCGGCAGCCTTCCTTTCTTCCTCCTTAACAACGGCGGCAGTAGAGGCGGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20487.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis