Browse Element(s) Details


Os.25521.2.S1_x_at

Description gb:CA765219
DB_XREF= gi:27547017
DB_XREF=AF53-Rpf_06_K20_T7_078.ab1
CLONE=C0002180
TID=Os.25521.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0045C13.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2051010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20480Os.51856.1.S2_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S2_x_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S1_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_x_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.27435.1.S1_x_at3/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20490OsAffx.22421.1.S1_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.4.S1_x_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.16244.1.S1_x_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.2.S1_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20500OsAffx.20487.1.S1_s_at11/1110+9998558..10000348hypothetical protein
LOC_Os10g20500OsAffx.20487.2.S1_at10/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.52284.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.29966.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20510Os.25521.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510OsAffx.18309.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_x_at10/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_at9/1110+10005999..10011288expressed protein
LOC_Os10g20520OsAffx.30462.1.S1_at11/1110+10012486..10012787hypothetical protein
LOC_Os10g20530OsAffx.20486.1.S1_at11/1110+10018428..10019190hypothetical protein
LOC_Os10g20540OsAffx.20485.1.S1_at11/1110+10022517..10025503hypothetical protein
LOC_Os10g20550Os.9663.1.S1_at10/1110+10026433..10027152expressed protein
LOC_Os10g20560OsAffx.6710.1.S1_at10/1110+10028725..10029871hypothetical protein
LOC_Os10g20570NANA10+10035111..10039348retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25521.2.S1_x_at--586--3071Chr10:10010137..10010161 (25 bp)
AATCATTCCAGTTCTATGTCTGAAG
LOC_Os10g20510
Os.25521.2.S1_x_at--375--131Chr10:10010172..10010196 (25 bp)
ATTAGAGGCTAGCACCATTCGTCTT
LOC_Os10g20510
Os.25521.2.S1_x_at--474--1731Chr10:10010185..10010209 (25 bp)
ACCATTCGTCTTCCAATTGTTTGTG
LOC_Os10g20510
Os.25521.2.S1_x_at--1057--3171Chr10:10010198..10010218 (21 bp)
CAATTGTTTGTGGTGCTAAGGCTGA
LOC_Os10g20510
Os.25521.2.S1_x_at--804--2811Chr10:10010322..10010346 (25 bp)
AAGTTGTCAGCTCTGCACTAACCAA
LOC_Os10g20510
Os.25521.2.S1_x_at--100--2971Chr10:10010356..10010380 (25 bp)
AATGGCTTCTTCAATGTGGTCTTTA
LOC_Os10g20510
Os.25521.2.S1_x_at--142--10691Chr10:10010883..10010907 (25 bp)
TTCCATGGTGTTTGAGCTAGCGAAA
LOC_Os10g20510
Os.25521.2.S1_x_at--112--5911Chr10:10010896..10010920 (25 bp)
GAGCTAGCGAAAGTTGTTTCACAAG
LOC_Os10g20510
Os.25521.2.S1_x_at--48--2791Chr10:10010943..10010967 (25 bp)
AAGAGACCTCTTTTCTGCGGTAGCA
LOC_Os10g20510
Os.25521.2.S1_x_at--669--1451Chr10:10011115..10011139 (25 bp)
AGAAGCTTGGCCAGGCACAGCTGTA
LOC_Os10g20510
Os.25521.2.S1_x_at--443--1771NONE
ACCTGTCTATAGTTAGCTGCATACA
NONE
Target Sequence 
AATCATTCCAGTTCTATGTCTGAAGCAATCAAAGCATTAGAGGCTAGCACCATTCGTCTTCCAATTGTTTGTGGTGCTAA
GGCTGATGCACAAGGTGTCAAGNAAGTTGTCAGCTCTGCACTAACCAAAATGGATACAATGGCTTCTTCAATGTGGTCTT
TATTGTCAAAGGTTGAAGGAATGAGTTCCATGGTGTTTGAGCTAGCGAAAGTTGTTTCACAAGAACAAATGTTGTTGGAT
CAATCAAGAGACCTCTTTTCTGCGGTAGCAGTCATGCACNTTNNNNNNNGTNNNNNNNNNNNNNGNNNTNTGCNANGANN
NTAGAAGCTTGGCCAGGCACAGCTGTAGGTCAATTTGGACACCAACCTTCTTGGCCAGTAACATCAGATGGCCTGAATTG
TTCTAACGGGGAGAGACTAGGCAATGAAACCTGTCTATAGTTAGCTGCATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25521.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis