Browse Element(s) Details


Os.52284.2.S1_x_at

Description gb:AK066077.1
DB_XREF= gi:32976095
TID=Os.52284.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013051F05, full insert sequence.
FL= gb:AK066077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3582011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os10g205001/11hypothetical protein
LOC_Os01g227201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35780NANA2+21497115..21499620transposon protein, putative, Mutator sub-class
LOC_Os02g35790OsAffx.24589.1.S1_at11/112+21501175..21501640hypothetical protein
LOC_Os02g35800NANA2+21502794..21505423retrotransposon protein, putative, unclassified
LOC_Os02g35810OsAffx.24590.1.S1_at11/112+21507163..21507769hypothetical protein
LOC_Os02g35820Os.52284.1.S1_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35820Os.55663.1.S1_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35820Os.52284.2.S1_x_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35830Os.16973.1.S1_at11/112+21520020..21523069expressed protein
LOC_Os02g35840Os.7921.1.S1_at11/112+21523733..21526921expressed protein
LOC_Os02g35849OsAffx.13875.1.S1_at2/112+21530597..21532263NA
LOC_Os02g35860Os.17728.1.S1_at10/112+21537741..21542976expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52284.2.S1_x_at--316--3452Chr08:23594512..23594534 (23 bp)
CAGTGGGCCCACAATTTCTTTTTTG
NONE
Os.52284.2.S1_x_at--183--799Chr11:19776559..19776583 (25 bp)
ATGGGCCCCGCATATATATTTTTAA
NONE
Os.52284.2.S1_x_at--60--10599Chr11:13220399..13220420 (22 bp)
TTCTAATGCCACTTAAGCGCCATGT
NONE
Os.52284.2.S1_x_at--276--5373Chr08:23594611..23594635 (25 bp)
GAAGACCTAGTCAATACTGCCACGT
NONE
Os.52284.2.S1_x_at--580--9912Chr05:23716415..23716435 (21 bp)
TACTGCCACGTAGACGCTATGTCAG
NONE
Os.52284.2.S1_x_at--481--4872Chr02:21516546..21516570 (25 bp)
GCTATGTCAGCGAAACCATCATCCA
LOC_Os02g35820
Os.52284.2.S1_x_at--201--76910Chr11:17750465..17750783 (25 bp)
GGGTCAAGATATCCGGTATTATGGT
NONE
Os.52284.2.S1_x_at--547--1611Chr02:21516707..21516731 (25 bp)
AGCTGTATAGCTGGCCATCTAAGGT
LOC_Os02g35820
Os.52284.2.S1_x_at--588--6551Chr02:21516749..21516773 (25 bp)
GATTATCACTGAATTCCATCCCAAC
LOC_Os02g35820
Os.52284.2.S1_x_at--642--9211Chr02:21516763..21516787 (25 bp)
TCCATCCCAACTGAGAAGGTGCCTA
LOC_Os02g35820
Os.52284.2.S1_x_at--621--7951Chr02:21516840..21516864 (25 bp)
GGATACTTGGGATCATGCACTTCTT
LOC_Os02g35820
Target Sequence 
CAGTGGGCCCACAATTTCTTTTTTGAATGACAAATGGGCCCCGCATATATATTTTTAATTCTAATGCCACTTAAGCGCCA
TGTCAACGCCACATAGGACGAAGACCTAGTCAATACTGCCACGTAGACGCTATGTCAGCGAAACCATCATCCAAAACCGC
CGAGGGAGTCAAATTATACCGGTTTTAATAGTTGAGGGGTCAAGATATCCGGTATTATGGTTTAGAGTCATGGATTAGAT
TCTGGTCACTTTTAAGGGAGTCAAAGTGAACTTATTCCTAGTTTTTATTAGCTGTATAGCTGGCCATCTAAGGTGAAATT
TTTTGCTTGGAGATTATCACTGAATTCCATCCCAACTGAGAAGGTGCCTAAGCAACGAAATATGAGTACAACTTGTATAT
GTAAAGTTTGTGGTGCTGCAGAGGATACTTGGGATCATGCACTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52284.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis