Browse Element(s) Details


OsAffx.24590.1.S1_at

Description tigr:9630.m03411
TID=OsAffx.24590.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3581011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35770Os.2362.1.S1_a_at11/112+21481741..21484025Homeobox domain containing protein, expressed
LOC_Os02g35770Os.2362.2.S1_x_at11/112+21481741..21484025Homeobox domain containing protein, expressed
LOC_Os02g35780NANA2+21497115..21499620transposon protein, putative, Mutator sub-class
LOC_Os02g35790OsAffx.24589.1.S1_at11/112+21501175..21501640hypothetical protein
LOC_Os02g35800NANA2+21502794..21505423retrotransposon protein, putative, unclassified
LOC_Os02g35810OsAffx.24590.1.S1_at11/112+21507163..21507769hypothetical protein
LOC_Os02g35820Os.52284.1.S1_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35820Os.55663.1.S1_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35820Os.52284.2.S1_x_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35830Os.16973.1.S1_at11/112+21520020..21523069expressed protein
LOC_Os02g35840Os.7921.1.S1_at11/112+21523733..21526921expressed protein
LOC_Os02g35849OsAffx.13875.1.S1_at2/112+21530597..21532263NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24590.1.S1_at--594--8811Chr02:21507707..21507731 (25 bp)
TGTTGAGGGATCCATGCTCCGCCAT
LOC_Os02g35810
OsAffx.24590.1.S1_at--1044--411Chr02:21507671..21507695 (25 bp)
ATCATCCTCTTCCACTGGTCAGATT
LOC_Os02g35810
OsAffx.24590.1.S1_at--13--1951Chr02:21507658..21507682 (25 bp)
ACTGGTCAGATTCGTTTTACTCCCT
LOC_Os02g35810
OsAffx.24590.1.S1_at--763--3811Chr02:21507635..21507659 (25 bp)
CTCCTCATTGTTGCCATTGGTGTAT
LOC_Os02g35810
OsAffx.24590.1.S1_at--940--1351Chr02:21507596..21507620 (25 bp)
AGAGCAAATTGTTCGGTATGTGTCC
LOC_Os02g35810
OsAffx.24590.1.S1_at--301--6931Chr02:21507581..21507605 (25 bp)
GTATGTGTCCCGCAGCAAGAAGAAC
LOC_Os02g35810
OsAffx.24590.1.S1_at--744--7391Chr02:21507547..21507571 (25 bp)
GTGTACTACAAGTGTTCAAACCGCA
LOC_Os02g35810
OsAffx.24590.1.S1_at--680--2611Chr02:21507444..21507553 (25 bp)
AACCGCACAGAGAGGAATGCCCCAT
LOC_Os02g35810
OsAffx.24590.1.S1_at--992--8171Chr02:21507431..21507455 (25 bp)
GGAATGCCCCATGCGATTTTTGGTA
LOC_Os02g35810
OsAffx.24590.1.S1_at--208--5273Chr02:13003643..13003663 (21 bp)
GAATGCTACCAGAAGTACCTTATCG
NONE
OsAffx.24590.1.S1_at--434--5391Chr02:21507244..21507268 (25 bp)
GAAGCAGCAAACTCTCTATTTGAAG
LOC_Os02g35810
Target Sequence 
TGTTGAGGGATCCATGCTCCGCCATCCTCGTCATGCATCATCCTCTTCCACTGGTCAGATTCGTTTTACTCCCTCCTCAT
TGTTGCCATTGGTGTATTATCCGGATTGTGGAGAGCAAATTGTTCGGTATGTGTCCCGCAGCAAGAAGAACCCAAATCGA
GTGTACTACAAGTGTTCAAACCGCACAGAGAGGAATGCCCCATGCGATTTTTGGTATTGGAAAGAATGCTACCAGAAGTA
CCTTATCGATCATGGATTGCTGAATGGAGATGCTAGTAGGGAAGAAATCAAGGGAGATAGTTCTGAAGAGGATGAAGTTG
AAGACCTAGGTTCAAAGAAGAAGCTTATAGATGTTGTATTGATGATGAGGTCCGAAGTGAAGCAGCAAACTCTCTATTTG
AAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis