Browse Element(s) Details


Os.2362.1.S1_a_at

Description gb:AY346328.1
DB_XREF= gi:33943623
TID=Os.2362.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2362 (NCBI UniGene Cluster)
UG_TITLE=Homeodomain leucine zipper protein (Oshox7) mRNA, partial cds
DEF=Oryza sativa (indica cultivar-group) homeodomain leucine-zipper protein Hox7 mRNA, complete cds.
FL= gb:AY346328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3577011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35720Os.24019.1.S1_at9/112+21456409..21458639Microsomal signal peptidase 25 kDa subunit family protein, expressed
LOC_Os02g35730NANA2+21462415..21462882hypothetical protein
LOC_Os02g35740NANA2+21464575..21465267hypothetical protein
LOC_Os02g35750Os.52706.1.S1_at11/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35750Os.52706.2.S1_at11/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35750Os.48048.1.A1_at10/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35760Os.53416.1.S1_at11/112+21468864..21471763Protein kinase domain containing protein, expressed
LOC_Os02g35770Os.2362.1.S1_a_at11/112+21481741..21484025Homeobox domain containing protein, expressed
LOC_Os02g35770Os.2362.2.S1_x_at11/112+21481741..21484025Homeobox domain containing protein, expressed
LOC_Os02g35780NANA2+21497115..21499620transposon protein, putative, Mutator sub-class
LOC_Os02g35790OsAffx.24589.1.S1_at11/112+21501175..21501640hypothetical protein
LOC_Os02g35800NANA2+21502794..21505423retrotransposon protein, putative, unclassified
LOC_Os02g35810OsAffx.24590.1.S1_at11/112+21507163..21507769hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009826biological_processunidimensional cell growth
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2362.1.S1_a_at--235--5071Chr02:21482211..21482235 (25 bp)
GCAGCTTCTGAGAGCTTCTCTCCGC
LOC_Os02g35770
Os.2362.1.S1_a_at--584--10251Chr02:21482092..21482116 (25 bp)
TTTGTTCGGCGCCAGACGGCCTCAT
LOC_Os02g35770
Os.2362.1.S1_a_at--415--1391Chr02:21482079..21482103 (25 bp)
AGACGGCCTCATTTTGGCCCCTTCG
LOC_Os02g35770
Os.2362.1.S1_a_at--735--4091Chr02:21482012..21482036 (25 bp)
CGACGTCGTGAGGTCTTAGCTTGCA
LOC_Os02g35770
Os.2362.1.S1_a_at--734--4011Chr02:21482009..21482033 (25 bp)
CGTCGTGAGGTCTTAGCTTGCAGTT
LOC_Os02g35770
Os.2362.1.S1_a_at--9--7391Chr02:21482005..21482029 (25 bp)
GTGAGGTCTTAGCTTGCAGTTTTTT
LOC_Os02g35770
Os.2362.1.S1_a_at--949--231Chr02:21481934..21481958 (25 bp)
ATATATACGCGTGCATTGATCATGT
LOC_Os02g35770
Os.2362.1.S1_a_at--917--311Chr02:21481930..21481954 (25 bp)
ATACGCGTGCATTGATCATGTAAAT
LOC_Os02g35770
Os.2362.1.S1_a_at--964--10772Chr02:21481919..21481943 (25 bp)
TTGATCATGTAAATGTTTTCCCTTT
LOC_Os02g35770
Os.2362.1.S1_a_at--59--6872Chr05:6782735..6782775 (25 bp)
GTTTGTTGTTCATCAAAATCATGCT
NONE
Os.2362.1.S1_a_at--618--3272Chr06:27325288..27325388 (25 bp)
CAAAATCATGCTTATATAGGGAAAT
NONE
Target Sequence 
GCAGCTTCTGAGAGCTTCTCTCCGCGCNTNTTCGCCNGGCGGCGGCGCCCCTGCCGCCATCACCGCCGCCGCCNCCNTGC
CGTNTCCNGGCGCTGGCTCACCNCCGTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCC
GCCGCCGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCAGTTTTTTTTTTCTTG
CACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATATACGCGTGCATTGATCATGTAAATGTTTTCCCTTT
TATGTTTGTTGTTCATCAAAATCATGCTTATATAGGGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2362.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis