Browse Element(s) Details


Os.53416.1.S1_at

Description gb:AK072522.1
DB_XREF= gi:32982545
TID=Os.53416.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132N04, full insert sequence.
FL= gb:AK072522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3576011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35690Os.18021.1.S1_at11/112+21443732..21445471expressed protein
LOC_Os02g35700Os.5448.1.S1_at11/112+21447255..21450023Nucleoside diphosphate kinase family protein, expressed
LOC_Os02g35710NANA2+21452107..21452475hypothetical protein
LOC_Os02g35720Os.24019.1.S1_at9/112+21456409..21458639Microsomal signal peptidase 25 kDa subunit family protein, expressed
LOC_Os02g35730NANA2+21462415..21462882hypothetical protein
LOC_Os02g35740NANA2+21464575..21465267hypothetical protein
LOC_Os02g35750Os.52706.1.S1_at11/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35750Os.52706.2.S1_at11/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35750Os.48048.1.A1_at10/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35760Os.53416.1.S1_at11/112+21468864..21471763Protein kinase domain containing protein, expressed
LOC_Os02g35770Os.2362.1.S1_a_at11/112+21481741..21484025Homeobox domain containing protein, expressed
LOC_Os02g35770Os.2362.2.S1_x_at11/112+21481741..21484025Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53416.1.S1_at--413--9111Chr02:21469440..21469464 (25 bp)
TGCGTTCAGTACGAAGCCGACTTCC
LOC_Os02g35760
Os.53416.1.S1_at--416--5771Chr02:21469405..21469429 (25 bp)
GACGATCGTCGTGAAGGCAATCCAG
LOC_Os02g35760
Os.53416.1.S1_at--589--5191Chr02:21469389..21469413 (25 bp)
GCAATCCAGCCTCTTCTGAATACAA
LOC_Os02g35760
Os.53416.1.S1_at--405--9851Chr02:21469369..21469393 (25 bp)
TACAAAACCAGCTGGGCCTGCAGAG
LOC_Os02g35760
Os.53416.1.S1_at--947--1711Chr02:21469342..21469366 (25 bp)
ACCACCTGCCTGATCAGATTGTATG
LOC_Os02g35760
Os.53416.1.S1_at--927--9051Chr02:21469271..21469295 (25 bp)
TGCATGGTTTCCTGTGTTTTCACAT
LOC_Os02g35760
Os.53416.1.S1_at--1116--6171Chr02:21469211..21469235 (25 bp)
GAGGAGCACCAATTCGGCATGATTT
LOC_Os02g35760
Os.53416.1.S1_at--759--1211Chr02:21469106..21469130 (25 bp)
AGTTATTCTTTGTCGTGTCATGGTG
LOC_Os02g35760
Os.53416.1.S1_at--838--8851Chr02:21469033..21469057 (25 bp)
TGCATTCCCAAGAACTTCCATGGCT
LOC_Os02g35760
Os.53416.1.S1_at--216--871Chr02:21469014..21469038 (25 bp)
ATGGCTGCCTCTTTTTCTTATATTT
LOC_Os02g35760
Os.53416.1.S1_at--73--7591Chr02:21468924..21468948 (25 bp)
GGGCTAAAATCCTGTTCCTGAATTC
LOC_Os02g35760
Target Sequence 
TGCGTTCAGTACGAAGCCGACTTCCGACCGAACATGACGATCGTCGTGAAGGCAATCCAGCCTCTTCTGAATACAAAACC
AGCTGGGCCTGCAGAGCCACCACCTGCCTGATCAGATTGTATGGGAGTTCTGCTCTAGGCAGACAGGGGAAAAAAAACCA
CACAAACTTTGCATGGTTTCCTGTGTTTTCACATCAGGCAGTGTATGTTTTAAGAAGCCATGCAACTTGGAGGAGCACCA
ATTCGGCATGATTTTTTGTAAAACACTGATCCATTGGTACCACAGGGTATATTACATATAGAGGGGGTATTTTGCTAACT
GGTGTAATGAATTAAGTTATTCTTTGTCGTGTCATGGTGTAATTTTAAGGTCCTTCAAAAGCTTGCATAGAACCAAGGAT
TGCATGATGCATTCCCAAGAACTTCCATGGCTGCCTCTTTTTCTTATATTTGTATAGAACTTTGGAATTAATAGTAGTTT
TTCTTCTTCTTTTTTTCTGTTGGAACTACAAAGCTGGGGCTAAAATCCTGTTCCTGAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis