Browse Element(s) Details


Os.18021.1.S1_at

Description gb:AK120665.1
DB_XREF= gi:37990288
TID=Os.18021.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159K02, full insert sequence.
FL= gb:AK120665.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3569011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35630OsAffx.12697.1.S1_x_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35630Os.21406.1.A1_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35640Os.22460.1.S1_at11/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35640OsAffx.12361.1.S1_at6/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35650OsAffx.12362.1.S1_at11/112+21429533..21429931Late embryogenesis abundant protein
LOC_Os02g35660OsAffx.12363.1.S1_at10/112+21430680..21433485Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g35670OsAffx.30226.2.S1_s_at11/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_x_at3/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.30226.2.S1_x_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35680OsAffx.24587.1.S1_x_at11/112+21440709..21441186hypothetical protein
LOC_Os02g35690Os.18021.1.S1_at11/112+21443732..21445471expressed protein
LOC_Os02g35700Os.5448.1.S1_at11/112+21447255..21450023Nucleoside diphosphate kinase family protein, expressed
LOC_Os02g35710NANA2+21452107..21452475hypothetical protein
LOC_Os02g35720Os.24019.1.S1_at9/112+21456409..21458639Microsomal signal peptidase 25 kDa subunit family protein, expressed
LOC_Os02g35730NANA2+21462415..21462882hypothetical protein
LOC_Os02g35740NANA2+21464575..21465267hypothetical protein
LOC_Os02g35750Os.52706.1.S1_at11/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35750Os.52706.2.S1_at11/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35750Os.48048.1.A1_at10/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35760Os.53416.1.S1_at11/112+21468864..21471763Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18021.1.S1_at--418--8451Chr02:21444312..21444336 (25 bp)
GGCCACTGATGTCGGTACCAGCAGC
LOC_Os02g35690
Os.18021.1.S1_at--1159--9971Chr02:21444297..21444321 (25 bp)
TACCAGCAGCAATCACCATGTTCGG
LOC_Os02g35690
Os.18021.1.S1_at--294--7831Chr02:21444274..21444298 (25 bp)
GGTACCGCTTCCAGGACAGCAGGCA
LOC_Os02g35690
Os.18021.1.S1_at--1064--4091Chr02:21444195..21444219 (25 bp)
CGAAGCCGCCAGAGGTACCGGGAAT
LOC_Os02g35690
Os.18021.1.S1_at--429--8491Chr02:21444104..21444128 (25 bp)
TGGCACCCGGTTTACATCTTGAAAG
LOC_Os02g35690
Os.18021.1.S1_at--309--10791Chr02:21444056..21444080 (25 bp)
TTGTATCAGTTAATTGGCATTGCCC
LOC_Os02g35690
Os.18021.1.S1_at--388--5211Chr02:21444022..21444046 (25 bp)
GAATTACCTCCCATTTAGGCTGTTC
LOC_Os02g35690
Os.18021.1.S1_at--347--3891Chr02:21443917..21443941 (25 bp)
CTGTGCCTGTGGGTGTTGTGTAACT
LOC_Os02g35690
Os.18021.1.S1_at--1020--6951Chr02:21443891..21443915 (25 bp)
GTAGCTGCTTGTTCATGCTTGTGAT
LOC_Os02g35690
Os.18021.1.S1_at--1100--4851Chr02:21443854..21443878 (25 bp)
GCTATGATGCAACTGCCATGTCCTG
LOC_Os02g35690
Os.18021.1.S1_at--417--771Chr02:21443837..21443861 (25 bp)
ATGTCCTGGCGAATACTGCATCGAT
LOC_Os02g35690
Target Sequence 
GGCCACTGATGTCGGTACCAGCAGCAATCACCATGTTCGGTACCGCTTCCAGGACAGCAGGCACTGCCATGCTGCCCCGC
AGCAGCCACAACACCAGTACAACGAGAACAATGCCGCCGAAGCCGCCAGAGGTACCGGGAATGGTAGCGATACCGACAAC
AAAGAAGACGNGNNNNAGNNNNNGNNNNANGNGGACGAGAGCCAGTAATGGCACCCGGTTTACATCTTGAAAGATTCAAG
AATTCNGATTTGTATGATTGTATCAGTTAATTGGCATTGCCCNTGGTGGTTAGAATTACCTCCCATTTAGGCTGTTCTGG
GAGCAACAAATGACATNTGAGTACTAGTTAGNGTCGGTATTAGCAACAAGGGGTAGCATAGTTATATGGTTATGTGCCTG
TGCCTGTGGGTGTTGTGTAACTTGTAGCTGCTTGTTCATGCTTGTGATGCTGTGGTNTGAGCTATGATGCAACTGCCATG
TCCTGGCGAATACTGCATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis