Browse Element(s) Details


Os.21406.1.A1_at

Description gb:BI812922
DB_XREF= gi:16578827
DB_XREF=G005D01
CLONE=G005D01
TID=Os.21406.1
CNT=20
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.21406 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_568792.1 (A.thaliana) ATP-dependent Clp protease ATP-binding subunit ClpX1 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3563011/11ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35570Os.38764.1.S1_x_at7/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35570Os.45173.1.S1_x_at2/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35580NANA2+21399799..21402998retrotransposon protein, putative, unclassified
LOC_Os02g35590Os.6851.2.S1_x_at11/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35590Os.6851.1.S1_at9/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35600Os.140.1.A1_s_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35600Os.49533.1.S1_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35610Os.18440.1.S1_at11/112+21412164..21415259expressed protein
LOC_Os02g35610Os.11016.1.S1_x_at11/112+21412164..21415259expressed protein
LOC_Os02g35620NANA2+21414355..21416497expressed protein
LOC_Os02g35630OsAffx.12697.1.S1_x_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35630Os.21406.1.A1_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35640Os.22460.1.S1_at11/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35640OsAffx.12361.1.S1_at6/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35650OsAffx.12362.1.S1_at11/112+21429533..21429931Late embryogenesis abundant protein
LOC_Os02g35660OsAffx.12363.1.S1_at10/112+21430680..21433485Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g35670OsAffx.30226.2.S1_s_at11/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_x_at3/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.30226.2.S1_x_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35680OsAffx.24587.1.S1_x_at11/112+21440709..21441186hypothetical protein
LOC_Os02g35690Os.18021.1.S1_at11/112+21443732..21445471expressed protein
LOC_Os02g35700Os.5448.1.S1_at11/112+21447255..21450023Nucleoside diphosphate kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21406.1.A1_at--1039--6531Chr02:21425409..21425433 (25 bp)
GATTTATTGGTTCTCACATCTCCTG
LOC_Os02g35630
Os.21406.1.A1_at--1040--3291Chr02:21425423..21425447 (25 bp)
CACATCTCCTGTATAACCCTGTAAA
LOC_Os02g35630
Os.21406.1.A1_at--300--3691Chr02:21425509..21425533 (25 bp)
CTATTGCTAGTTAAAAAGGCTCCAG
LOC_Os02g35630
Os.21406.1.A1_at--953--2931Chr02:21425524..21425548 (25 bp)
AAGGCTCCAGCGCAATGTTCAGCAC
LOC_Os02g35630
Os.21406.1.A1_at--4--7951Chr02:21425604..21425628 (25 bp)
GGATATTTATGGGTGTCGTACAGAC
LOC_Os02g35630
Os.21406.1.A1_at--62--7451Chr02:21425616..21425640 (25 bp)
GTGTCGTACAGACAACCCTGGTTGT
LOC_Os02g35630
Os.21406.1.A1_at--994--2591Chr02:21425629..21425653 (25 bp)
AACCCTGGTTGTCATGAAAATGTAA
LOC_Os02g35630
Os.21406.1.A1_at--553--7271Chr02:21425655..21425679 (25 bp)
GTCCAAGAATTGTGATGACTGCTGA
LOC_Os02g35630
Os.21406.1.A1_at--206--4391Chr02:21425736..21425761 (25 bp)
GCCAATAATGCTGTTGTCAAATGTT
LOC_Os02g35630
Os.21406.1.A1_at--30--2991Chr02:21425756..21425780 (25 bp)
AATGTTGGTGTTGTTCAGTGTTTAC
LOC_Os02g35630
Os.21406.1.A1_at--80--6831Chr02:21425775..21425799 (25 bp)
GTTTACGTGATAGTGGAGCCCATTT
LOC_Os02g35630
Target Sequence 
GATTTATTGGTTCTCACATCTCCTGTATAACCCTGTAAAATCTAATCCCAGATGTAATAATGTAAGTATTAGCCTTGTAA
AGGAATATTGTGTGTAGTGTCTATTGCTAGTTAAAAAGGCTCCAGCGCAATGTTCAGCACCCCCACGCTCTTTACTTAAT
TTGCAGCAGGGTTTGGAAAGAGTATATAGCTCAGGGGATATTTATGGGTGTCGTACAGACAACCCTGGTTGTCATGAAAA
TGTAATGTCCAAGAATTGTGATGACTGCTGATGGATGTAAAAAAAAAACTTAGAAACAATGAAACGCATTGAAANGGGGA
ANGNAANGCCAATAATGCTGTTGTCAAATGTTGGTGTTGTTCAGTGTTTACGTGATAGTGGAGCCCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21406.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis