Browse Element(s) Details


Os.5448.1.S1_at

Description gb:AK106382.1
DB_XREF= gi:32991591
TID=Os.5448.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E02, full insert sequence.
FL= gb:AK106382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3570011/11Nucleoside diphosphate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35630OsAffx.12697.1.S1_x_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35630Os.21406.1.A1_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35640Os.22460.1.S1_at11/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35640OsAffx.12361.1.S1_at6/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35650OsAffx.12362.1.S1_at11/112+21429533..21429931Late embryogenesis abundant protein
LOC_Os02g35660OsAffx.12363.1.S1_at10/112+21430680..21433485Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g35670OsAffx.30226.2.S1_s_at11/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_x_at3/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.30226.2.S1_x_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35680OsAffx.24587.1.S1_x_at11/112+21440709..21441186hypothetical protein
LOC_Os02g35690Os.18021.1.S1_at11/112+21443732..21445471expressed protein
LOC_Os02g35700Os.5448.1.S1_at11/112+21447255..21450023Nucleoside diphosphate kinase family protein, expressed
LOC_Os02g35710NANA2+21452107..21452475hypothetical protein
LOC_Os02g35720Os.24019.1.S1_at9/112+21456409..21458639Microsomal signal peptidase 25 kDa subunit family protein, expressed
LOC_Os02g35730NANA2+21462415..21462882hypothetical protein
LOC_Os02g35740NANA2+21464575..21465267hypothetical protein
LOC_Os02g35750Os.52706.1.S1_at11/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35750Os.52706.2.S1_at11/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35750Os.48048.1.A1_at10/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35760Os.53416.1.S1_at11/112+21468864..21471763Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009585biological_processred, far-red light phototransduction
GO:0009734biological_processauxin mediated signaling pathway
GO:0042542biological_processresponse to hydrogen peroxide
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0004550molecular_functionnucleoside diphosphate kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5448.1.S1_at--755--3511Chr02:21449448..21449472 (25 bp)
CATGATGAGCTGTAGTCCTGTAGAG
LOC_Os02g35700
Os.5448.1.S1_at--163--9771Chr02:21449534..21449558 (25 bp)
TACAGTGCCTAACACCTGGTTGGAC
LOC_Os02g35700
Os.5448.1.S1_at--659--2771Chr02:21449641..21449665 (25 bp)
AAGACCAGGACGGTGCATGCCAGAA
LOC_Os02g35700
Os.5448.1.S1_at--212--8691Chr02:21449718..21449742 (25 bp)
TGTGCATCCAATCTTCTGTAAGCCT
LOC_Os02g35700
Os.5448.1.S1_at--950--1671Chr02:21449738..21449762 (25 bp)
AGCCTCGTATATTTAGCCTAGCCTG
LOC_Os02g35700
Os.5448.1.S1_at--753--9992Chr02:21449756..21449780 (25 bp)
TAGCCTGTGCTGTTCATTTCAAAGA
LOC_Os02g35700
Os.5448.1.S1_at--432--2351Chr02:21449798..21449822 (25 bp)
AACTACCCCTGTTTCTGATCGTTAG
LOC_Os02g35700
Os.5448.1.S1_at--696--3131Chr02:21449840..21449864 (25 bp)
AATTTTGCTGATCATTGACCCTAAA
LOC_Os02g35700
Os.5448.1.S1_at--411--10331Chr02:21449884..21449908 (25 bp)
TTTCAGAATCCAGAGAGCCCCTATG
LOC_Os02g35700
Os.5448.1.S1_at--605--5871Chr02:21449898..21449922 (25 bp)
GAGCCCCTATGAGGCTATGACCTAT
LOC_Os02g35700
Os.5448.1.S1_at--431--1211Chr02:21449999..21450023 (25 bp)
AGTTTCTTCTCTCTGCTTTGCAATT
LOC_Os02g35700
Target Sequence 
CATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCAGTTTATTT
GTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAG
TTCAAGGAAATTAACTTTAGATTGTGTATGGTAAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCA
AATGTAATCGTTTTTGTACTGGTGCAAACTTGTGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCCTAGCCTGTGCTG
TTCATTTCAAAGAAATCGTTAGCCATCACGAACTACCCCTGTTTCTGATCGTTAGCNATGATAGTGATCTAAAATTTTGC
TGATCATTGACCCTAAAATAAAATTCTGAACAGTAATTTCAGAATCCAGAGAGCCCCTATGAGGCTATGACCTATCTGAA
GTTCTGAACCGGGGAGATTTCACGTGAGTTTTGTTTCTTGTAAATCATGGACAAAACTAACAGCAGAATTGAGTTTCTTC
TCTCTGCTTTGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis