Browse Element(s) Details


OsAffx.12361.1.S1_at

Description tigr:9630.m03394
TID=OsAffx.12361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g356406/11pRGR1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35580NANA2+21399799..21402998retrotransposon protein, putative, unclassified
LOC_Os02g35590Os.6851.2.S1_x_at11/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35590Os.6851.1.S1_at9/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35600Os.140.1.A1_s_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35600Os.49533.1.S1_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35610Os.18440.1.S1_at11/112+21412164..21415259expressed protein
LOC_Os02g35610Os.11016.1.S1_x_at11/112+21412164..21415259expressed protein
LOC_Os02g35620NANA2+21414355..21416497expressed protein
LOC_Os02g35630OsAffx.12697.1.S1_x_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35630Os.21406.1.A1_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35640Os.22460.1.S1_at11/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35640OsAffx.12361.1.S1_at6/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35650OsAffx.12362.1.S1_at11/112+21429533..21429931Late embryogenesis abundant protein
LOC_Os02g35660OsAffx.12363.1.S1_at10/112+21430680..21433485Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g35670OsAffx.30226.2.S1_s_at11/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_x_at3/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.30226.2.S1_x_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35680OsAffx.24587.1.S1_x_at11/112+21440709..21441186hypothetical protein
LOC_Os02g35690Os.18021.1.S1_at11/112+21443732..21445471expressed protein
LOC_Os02g35700Os.5448.1.S1_at11/112+21447255..21450023Nucleoside diphosphate kinase family protein, expressed
LOC_Os02g35710NANA2+21452107..21452475hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12361.1.S1_at--750--6391Chr02:21428733..21428757 (25 bp)
GATCGATCCGGGTTCCTCGCTCAGA
LOC_Os02g35640
OsAffx.12361.1.S1_at--451--10671Chr02:21428634..21428745 (25 bp)
TTCCTCGCTCAGATCTGAGGCTGTA
LOC_Os02g35640
OsAffx.12361.1.S1_at--484--9711Chr02:21427498..21427522 (25 bp)
TCAACTTGTTGAATTATGTCTACAT
LOC_Os02g35640
OsAffx.12361.1.S1_at--1029--6751Chr02:21427481..21427505 (25 bp)
GTCTACATAAATGTTAACCTGTACT
LOC_Os02g35640
OsAffx.12361.1.S1_at--220--9811Chr02:21427467..21427491 (25 bp)
TAACCTGTACTTTAACTTTGCCATG
LOC_Os02g35640
OsAffx.12361.1.S1_at--763--7011Chr02:21427465..21427485 (21 bp)
GTACTTTAACTTTGCCATGGTGCAC
LOC_Os02g35640
OsAffx.12361.1.S1_at--422--9531Chr02:21426336..21426360 (25 bp)
TCTCAAGTTCTTCCAGAGTGCAACT
NONE
OsAffx.12361.1.S1_at--1107--1211Chr02:21426331..21426355 (25 bp)
AGTTCTTCCAGAGTGCAACTTTGGA
NONE
OsAffx.12361.1.S1_at--1081--1111Chr02:21426320..21426344 (25 bp)
AGTGCAACTTTGGAATTTATCTCGT
NONE
OsAffx.12361.1.S1_at--1013--5211Chr02:21426308..21426332 (25 bp)
GAATTTATCTCGTTTGGCTTAGCTC
NONE
OsAffx.12361.1.S1_at--136--10351Chr02:21426305..21426329 (25 bp)
TTTATCTCGTTTGGCTTAGCTCTAC
NONE
Target Sequence 
GATCGATCCGGGTTCCTCGCTCAGATCTGAGGCTGTACGGCTTCGCGATATGCTTGGCTGCCGGATTGACGTGCACCTTC
TTGTCAATGCTTGTTTTCTTCAATCCTGTGAAATTCGGGGTAACATTCACCCTTGGCAATTTGATGGCACTTGGAAGATG
GGGTTTCAACTTGTTGAATTATGTCTACATAAATGTTAACCTGTACTTTAACTTTGCCATGGTGCACAGCAAGCTGCTGA
CTCTACTTGCCATTATCTTGGAATTTGGTGCTCTTGTTTGGTTGCTCCTGGATTTTCCTGCTTCTCAAGTTCTTCCAGAG
TGCAACTTTGGAATTTATCTCGTTTGGCTTAGCTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis