Browse Element(s) Details


OsAffx.12697.1.S1_x_at

Description tigr:9630.m05898
TID=OsAffx.12697.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATP-dependent Clp protease ATP-binding subunit ClpX1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3563011/11ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35570Os.38764.1.S1_x_at7/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35570Os.45173.1.S1_x_at2/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35580NANA2+21399799..21402998retrotransposon protein, putative, unclassified
LOC_Os02g35590Os.6851.2.S1_x_at11/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35590Os.6851.1.S1_at9/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35600Os.140.1.A1_s_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35600Os.49533.1.S1_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35610Os.18440.1.S1_at11/112+21412164..21415259expressed protein
LOC_Os02g35610Os.11016.1.S1_x_at11/112+21412164..21415259expressed protein
LOC_Os02g35620NANA2+21414355..21416497expressed protein
LOC_Os02g35630OsAffx.12697.1.S1_x_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35630Os.21406.1.A1_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35640Os.22460.1.S1_at11/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35640OsAffx.12361.1.S1_at6/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35650OsAffx.12362.1.S1_at11/112+21429533..21429931Late embryogenesis abundant protein
LOC_Os02g35660OsAffx.12363.1.S1_at10/112+21430680..21433485Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g35670OsAffx.30226.2.S1_s_at11/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_x_at3/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.30226.2.S1_x_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35680OsAffx.24587.1.S1_x_at11/112+21440709..21441186hypothetical protein
LOC_Os02g35690Os.18021.1.S1_at11/112+21443732..21445471expressed protein
LOC_Os02g35700Os.5448.1.S1_at11/112+21447255..21450023Nucleoside diphosphate kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12697.1.S1_x_at--344--1771Chr02:21424297..21424321 (25 bp)
ACCTGTCCGTGCTAACATGAGGGCA
LOC_Os02g35630
OsAffx.12697.1.S1_x_at--627--8271Chr02:21424318..21424342 (25 bp)
GGCAGGTGGCATCTCAAGTGCTCAA
LOC_Os02g35630
OsAffx.12697.1.S1_x_at--812--5231Chr02:21424361..21424514 (25 bp)
GAATCAGTTGAGAGTGGCGACCTAA
LOC_Os02g35630
OsAffx.12697.1.S1_x_at--175--10411Chr02:21424539..21424563 (25 bp)
TTATTGGACGGTTTCCTATCCTTGT
LOC_Os02g35630
OsAffx.12697.1.S1_x_at--1044--10131Chr02:21424555..21424579 (25 bp)
TATCCTTGTTAGCTTGGCAGCTCTA
LOC_Os02g35630
OsAffx.12697.1.S1_x_at--82--971Chr02:21424584..21424749 (25 bp)
AGGACCAGCTTGTTCAGGTTCTCAT
LOC_Os02g35630
OsAffx.12697.1.S1_x_at--593--7331Chr02:21424949..21424973 (25 bp)
GTGCACGTGGTTTAAGGACTATCCT
LOC_Os02g35630
OsAffx.12697.1.S1_x_at--376--7191Chr02:21425169..21425193 (25 bp)
GTCGGAGCAGTGGACCAACCTGGCT
LOC_Os02g35630
OsAffx.12697.1.S1_x_at--733--2611Chr02:21425185..21425209 (25 bp)
AACCTGGCTGCGGAGCTAAGATCCT
LOC_Os02g35630
OsAffx.12697.1.S1_x_at--110--2811Chr02:21425202..21425226 (25 bp)
AAGATCCTTTATGGCGATGGTGCTT
LOC_Os02g35630
OsAffx.12697.1.S1_x_at--212--7311Chr02:21425221..21425245 (25 bp)
GTGCTTTTGAACGTTATCTCTCCCA
LOC_Os02g35630
Target Sequence 
ACCTGTCCGTGCTAACATGAGGGCAGGTGGCATCTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCAGTTGAGAGTG
GCGACCTAATAGCATATGGACTTATTCCGGAATTTATTGGACGGTTTCCTATCCTTGTTAGCTTGGCAGCTCTAAACGAG
GACCAGCTTGTTCAGGTTCTCATGGAGCCAAAAAATGCTCTGGGTAAACAATTCAAGAAATTATTCAGCATGAATAATGT
CAAGCTTCATTTTACAGATGCTGCACTTAGAATAATTGCCAAGAAGGCAATGTCCAAAAATACGGGTGCACGTGGTTTAA
GGACTATCCTTGAGAATATTCTCATGGATGCTATGTACGAGATTCCAGATGCAAAATCTGGTGAGAAGCGAATCGATGCG
GTGGTTGTAGATGAAGACGCAGTCGGAGCAGTGGACCAACCTGGCTGCGGAGCTAAGATCCTTTATGGCGATGGTGCTTT
TGAACGTTATCTCTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12697.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis