Browse Element(s) Details


Os.22460.1.S1_at

Description gb:AK103450.1
DB_XREF= gi:32988659
TID=Os.22460.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129I06, full insert sequence.
FL= gb:AK103450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3564011/11pRGR1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35580NANA2+21399799..21402998retrotransposon protein, putative, unclassified
LOC_Os02g35590Os.6851.2.S1_x_at11/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35590Os.6851.1.S1_at9/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35600Os.140.1.A1_s_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35600Os.49533.1.S1_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35610Os.18440.1.S1_at11/112+21412164..21415259expressed protein
LOC_Os02g35610Os.11016.1.S1_x_at11/112+21412164..21415259expressed protein
LOC_Os02g35620NANA2+21414355..21416497expressed protein
LOC_Os02g35630OsAffx.12697.1.S1_x_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35630Os.21406.1.A1_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35640Os.22460.1.S1_at11/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35640OsAffx.12361.1.S1_at6/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35650OsAffx.12362.1.S1_at11/112+21429533..21429931Late embryogenesis abundant protein
LOC_Os02g35660OsAffx.12363.1.S1_at10/112+21430680..21433485Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g35670OsAffx.30226.2.S1_s_at11/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_x_at3/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.30226.2.S1_x_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35680OsAffx.24587.1.S1_x_at11/112+21440709..21441186hypothetical protein
LOC_Os02g35690Os.18021.1.S1_at11/112+21443732..21445471expressed protein
LOC_Os02g35700Os.5448.1.S1_at11/112+21447255..21450023Nucleoside diphosphate kinase family protein, expressed
LOC_Os02g35710NANA2+21452107..21452475hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22460.1.S1_at--615--7031Chr02:21427296..21427320 (25 bp)
GTACAGCGTTTCTTATAGGTCCCAA
LOC_Os02g35640
Os.22460.1.S1_at--547--2111Chr02:21427260..21427284 (25 bp)
ACATGATGCTTGATTCTGTGCGGAT
LOC_Os02g35640
Os.22460.1.S1_at--418--371Chr02:21427204..21427228 (25 bp)
ATAATTGCTCTGTTCTGTGCTCTCT
LOC_Os02g35640
Os.22460.1.S1_at--1126--9511Chr02:21426709..21426733 (25 bp)
TCTAAGCTATATACCCTTTGCACGC
LOC_Os02g35640
Os.22460.1.S1_at--194--691Chr02:21426666..21426690 (25 bp)
ATGACGTCTTGCTTCGACACTGAAT
LOC_Os02g35640
Os.22460.1.S1_at--462--5271Chr02:21426637..21426661 (25 bp)
GAATGACCATCCTGATCTACATGTT
LOC_Os02g35640
Os.22460.1.S1_at--449--451Chr02:21426623..21426647 (25 bp)
ATCTACATGTTGTTGCTGGACGCAT
LOC_Os02g35640
Os.22460.1.S1_at--523--3791Chr02:21426538..21426562 (25 bp)
CTCCGATTAGCCTGTGTAGTCATTC
LOC_Os02g35640
Os.22460.1.S1_at--72--3971Chr02:21426495..21426519 (25 bp)
CGGATTTGTGCGTCTTATGCTCAGA
LOC_Os02g35640
Os.22460.1.S1_at--681--1991Chr02:21426405..21426429 (25 bp)
ACTCCGCATTCGAACGTTTACTGTG
LOC_Os02g35640
Os.22460.1.S1_at--359--7931Chr02:21426370..21426394 (25 bp)
GGATTGTCCTAGGTTGCTCCTGGAT
LOC_Os02g35640
Target Sequence 
GTACAGCGTTTCTTATAGGTCCCAAAAGGCAATTTGACATGATGCTTGATTCTGTGCGGATATATGCAACTGCTGTATAC
ATTGCAAGCATCATAATTGCTCTGTTCTGTGCTCTCTTTGTGCACAGCAAGCTGCTGACTCTACTTGCCATTATCTTGGA
ATTTGGTGCTCTTGNTTGGTACAGTCTAAGCTATATACCCTTTGCACGCTCGGTTGTTTCNAANGTGATGACGTCTTGCT
TCGACACTGAATTCTAGAATGACCATCCTGATCTACATGTTGTTGCTGGACGCATAGATGATATATCTGTAATATACTGT
GTATTTTGATGGAGAAGTGGAGTGGGGGTCATCTTCTCCGATTAGCCTGTGTAGTCATTCTGATGTTGTGAAGACACACG
GATTTGTGCGTCTTATGCTCAGAGATCATGTCATCTTTTCCTCACTTCCCCCCCTTCTTCCCCACATTTGTACATGGTAA
CCACTTACACTCCGCATTCGAACGTTTACTGTGCAGTTTGTTTGGATTGTCCTAGGTTGCTCCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis