Browse Element(s) Details


OsAffx.30226.2.S1_x_at

Description gb:NM_195760.1
DB_XREF= gi:37532879
TID=OsAffx.30226.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retrotransposon-related protein (OSJNBb0008A05.26), mRNA.
PROD=putative retrotransposon-related protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1842011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g179704/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g150304/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g119404/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g017804/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g137904/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g724004/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g536104/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g464504/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g014504/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g144104/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g107103/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g093803/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g083703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g191603/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g055503/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g212003/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g279103/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g123903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g329103/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g357403/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g086403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g119802/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g205702/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g058402/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g112902/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g233202/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g139602/11retrotransposon protein, putative, unclassified
LOC_Os09g120902/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g733802/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g187802/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g341202/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g111602/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g242602/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g358101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g293201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g432201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g418301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g551401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g121301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g191901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g406401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g356701/11hypothetical protein
LOC_Os11g154001/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g167101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g026001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g442901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g232401/11hypothetical protein
LOC_Os02g222101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g052001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g505301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g352901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g166801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g365001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g038301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g520201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g026701/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g479201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g210801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g115501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g351101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g108901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g120901/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18370Os.7711.1.S1_at11/1110+9006514..9007842Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g18380OsAffx.30446.1.S1_at11/1110+9010894..9011933hypothetical protein
LOC_Os10g18390OsAffx.2524.1.S1_at9/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_x_at2/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18390OsAffx.19264.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18400Os.46702.1.S1_at11/1110+9017673..9025056Beta-galactosidase precursor, putative, expressed
LOC_Os10g18410OsAffx.18289.1.S1_at10/1110+9030786..9031094hypothetical protein
LOC_Os10g18420OsAffx.30226.2.S1_x_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.2.S1_s_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.442.1.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.4.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_x_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.24587.1.S1_x_at1/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18430OsAffx.18290.1.S1_at11/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18430OsAffx.10096.1.S1_x_at1/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18440OsAffx.20524.1.S1_at11/1110+9038319..9042196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18450OsAffx.30829.1.A1_at11/1110+9045662..9046599expressed protein
LOC_Os10g18460OsAffx.18291.1.S1_at9/1110+9049931..9050919hypothetical protein
LOC_Os10g18470OsAffx.20523.1.S1_x_at11/1110+9052638..9053192expressed protein
LOC_Os10g18470OsAffx.20523.1.S1_at11/1110+9052638..9053192expressed protein
LOC_Os10g18480Os.25230.2.A1_at4/1110+9054309..9055175Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os10g18490NANA10+9057750..9058355Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os10g18500OsAffx.6691.1.S1_at11/1110+9059072..9059563hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30226.2.S1_x_at--227--3329Chr10:256184..256208 (25 bp)
ATACATGTCTAGAGTTCCATATTCT
LOC_Os10g01450
OsAffx.30226.2.S1_x_at--907--3574Chr12:21729566..21729590 (25 bp)
CATATTCTAGTGTTGTTGGTTCTTT
LOC_Os12g35740
OsAffx.30226.2.S1_x_at--187--101311Chr09:8083801..8083825 (25 bp)
TATGCCATGGTTTGCTCCCGTCCAG
LOC_Os09g13790
OsAffx.30226.2.S1_x_at--769--4231Chr10:9032193..9032217 (25 bp)
CCGTCCAGTTTTATCTCATGCTATG
LOC_Os10g18420
OsAffx.30226.2.S1_x_at--1001--100551Chr12:21795501..21795523 (23 bp)
TAGTAGATACATGGCTAATCCTGGT
LOC_Os12g35810
OsAffx.30226.2.S1_x_at--998--52922Chr10:256493..256517 (25 bp)
GAAGGCAACATTGCAGCCTGTTGTT
LOC_Os10g01450
OsAffx.30226.2.S1_x_at--327--10711Chr10:9031924..9031948 (25 bp)
TTGCCCAGTCTACCGCTGAAGCAGA
LOC_Os10g18420
OsAffx.30226.2.S1_x_at--484--52323Chr10:256539..256563 (25 bp)
GAATACATGGCTATTGCTGAAGCAT
LOC_Os10g01450
OsAffx.30226.2.S1_x_at--615--6851Chr10:9031848..9031872 (25 bp)
GTTTGCTGAGCTTTGTAGAGTTGAT
LOC_Os10g18420
OsAffx.30226.2.S1_x_at--932--1331Chr10:9031832..9031856 (25 bp)
AGAGTTGATTCTTACATTAACTTGT
LOC_Os10g18420
OsAffx.30226.2.S1_x_at--605--7091Chr10:9031798..9031822 (25 bp)
GTCAAAGTGTTATATGCCTCACCAA
LOC_Os10g18420
Target Sequence 
ATACATGTCTAGAGTTCCATATTCTAGTGTTGTTGGTTCTTTGATGTATGCCATGGTTTGCTCCCGTCCAGTTTTATCTC
ATGCTATGAGTTTGGTTAGTAGATACATGGCTAATCCTGGTAAAGAACACTGGAAAGCTGTTCAGTGGATTTTCAGGTAC
CTCAGAGGCACAGCTGATGCTTGCTTGAAGTTTGGCAGGACTGATAAGGGGCTTGTTGGATATGTGGATTCAGATTTTGC
TGCAGATTTGGATAAGAGAAGGTCACTCACAGGTTATGTGTTTACCATTGGTAGTTGTGCTGTGAGTTGGAAGGCAACAT
TGCAGCCTGTTGTTGCCCAGTCTACCGCTGAAGCAGAATACATGGCTATTGCTGAAGCATGTAAAGAATCAGTTTGGCTG
AAAGGATTGTTTGCTGAGCTTTGTAGAGTTGATTCTTACATTAACTTGTTTTGTGACAGTCAAAGTGTTATATGCCTCAC
CAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30226.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis