Browse Element(s) Details


OsAffx.18291.1.S1_at

Description tigr:9638.m01539
TID=OsAffx.18291.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g184609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18400Os.46702.1.S1_at11/1110+9017673..9025056Beta-galactosidase precursor, putative, expressed
LOC_Os10g18410OsAffx.18289.1.S1_at10/1110+9030786..9031094hypothetical protein
LOC_Os10g18420OsAffx.30226.2.S1_x_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.2.S1_s_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.442.1.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.4.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_x_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.24587.1.S1_x_at1/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18430OsAffx.18290.1.S1_at11/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18430OsAffx.10096.1.S1_x_at1/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18440OsAffx.20524.1.S1_at11/1110+9038319..9042196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18450OsAffx.30829.1.A1_at11/1110+9045662..9046599expressed protein
LOC_Os10g18460OsAffx.18291.1.S1_at9/1110+9049931..9050919hypothetical protein
LOC_Os10g18470OsAffx.20523.1.S1_x_at11/1110+9052638..9053192expressed protein
LOC_Os10g18470OsAffx.20523.1.S1_at11/1110+9052638..9053192expressed protein
LOC_Os10g18480Os.25230.2.A1_at4/1110+9054309..9055175Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os10g18490NANA10+9057750..9058355Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os10g18500OsAffx.6691.1.S1_at11/1110+9059072..9059563hypothetical protein
LOC_Os10g18510NANA10+9061841..9064122UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os10g18520NANA10+9064903..9065118hypothetical protein
LOC_Os10g18530NANA10+9068364..9069065Cytokinin-O-glucosyltransferase 2, putative
LOC_Os10g18540Os.10731.2.A1_at1/1110+9071664..9073920retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18291.1.S1_at--479--3671Chr10:9050863..9050887 (25 bp)
CTTTCTGCTCGCTCTAGTGTTGTGG
LOC_Os10g18460
OsAffx.18291.1.S1_at--1122--10591Chr10:9050861..9050885 (25 bp)
TTCTGCTCGCTCTAGTGTTGTGGAT
LOC_Os10g18460
OsAffx.18291.1.S1_at--111--9491Chr10:9050860..9050884 (25 bp)
TCTGCTCGCTCTAGTGTTGTGGATT
LOC_Os10g18460
OsAffx.18291.1.S1_at--171--9091Chr10:9050858..9050882 (25 bp)
TGCTCGCTCTAGTGTTGTGGATTTG
LOC_Os10g18460
OsAffx.18291.1.S1_at--970--3791Chr10:9050856..9050880 (25 bp)
CTCGCTCTAGTGTTGTGGATTTGGA
LOC_Os10g18460
OsAffx.18291.1.S1_at--548--6631Chr10:9050845..9050869 (25 bp)
GTTGTGGATTTGGAGGGCATTGCCT
LOC_Os10g18460
OsAffx.18291.1.S1_at--80--1091Chr10:9050832..9050856 (25 bp)
AGGGCATTGCCTCTCGAAAGTCAAA
LOC_Os10g18460
OsAffx.18291.1.S1_at--30--4951NONE
GCATTGCCTCTCGAAAGTCAAAGCT
NONE
OsAffx.18291.1.S1_at--1102--71Chr10:9050831..9050851 (21 bp)
ATTGCCTCTCGAAAGTCAAAGCTGG
LOC_Os10g18460
OsAffx.18291.1.S1_at--928--10671Chr10:9050831..9050850 (20 bp)
TTGCCTCTCGAAAGTCAAAGCTGGA
LOC_Os10g18460
OsAffx.18291.1.S1_at--520--9191NONE
TGCCTCTCGAAAGTCAAAGCTGGAG
NONE
Target Sequence 
CTTTCTGCTCGCTCTAGTGTTGTGGATTTGGAGGGCATTGCCTCTCGAAAGTCAAAGCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis