Browse Element(s) Details


OsAffx.30226.4.S1_x_at

Description tigr:9636.m03027
TID=OsAffx.30226.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3036011/11hypothetical protein
LOC_Os02g123905/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g724005/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g119405/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g144105/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g055504/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g086404/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g107103/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g181203/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g184203/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g150303/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g083703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g108903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g187603/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g279103/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g233203/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g137903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g733803/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g139602/11retrotransposon protein, putative, unclassified
LOC_Os04g111502/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g211702/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g017802/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g167101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g014401/11hypothetical protein
LOC_Os12g357401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g093801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30310Os.45976.1.S1_x_at2/118+18526936..18527873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30320NANA8+18528360..18529601transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30330NANA8+18532717..18537091transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30340Os.35288.1.S1_at11/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340OsAffx.23126.1.S1_at3/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340OsAffx.22776.2.S1_at2/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340Os.38043.1.S1_x_at1/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340Os.532.1.S1_s_at1/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30350NANA8+18547307..18548754hypothetical protein
LOC_Os08g30360OsAffx.30226.4.S1_x_at11/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.4.S1_at11/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.1.S1_at1/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.1.S1_x_at1/118+18549181..18549816hypothetical protein
LOC_Os08g30370OsAffx.17239.1.S1_at11/118+18551523..18553336hypothetical protein
LOC_Os08g30370Os.52363.1.S1_x_at6/118+18551523..18553336hypothetical protein
LOC_Os08g30380OsAffx.29433.1.S1_at11/118+18560460..18561182hypothetical protein
LOC_Os08g30390NANA8+18562307..18562808NA
LOC_Os08g30400NANA8+18565111..18569450Transposable element protein, putative, Retrotrans_gag
LOC_Os08g30410OsAffx.29434.1.S1_at11/118+18574343..18574756hypothetical protein
LOC_Os08g30410OsAffx.29434.1.S1_x_at11/118+18574343..18574756hypothetical protein
LOC_Os08g30410OsAffx.15821.2.S1_at1/118+18574343..18574756hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30226.4.S1_x_at--693--5591Chr08:18549345..18549369 (25 bp)
GAAATATCGTAAGGCTCCGTCGCTG
LOC_Os08g30360
OsAffx.30226.4.S1_x_at--879--3091Chr08:18549347..18549371 (25 bp)
AATATCGTAAGGCTCCGTCGCTGAT
LOC_Os08g30360
OsAffx.30226.4.S1_x_at--674--10131Chr08:18549349..18549373 (25 bp)
TATCGTAAGGCTCCGTCGCTGATCC
LOC_Os08g30360
OsAffx.30226.4.S1_x_at--57--28313Chr09:9065189..9065213 (25 bp)
AAGTTGTTCTCGCACAAGTTGCAGG
LOC_Os09g15030
OsAffx.30226.4.S1_x_at--131--28312Chr09:9065204..9065267 (25 bp)
AAGTTGCAGGAGATCGTTGCCGACC
LOC_Os09g15030
OsAffx.30226.4.S1_x_at--362--66719Chr09:9065098..9065269 (25 bp)
GTTGCAGGAGATCGTTGCCGACCTA
LOC_Os09g15030
OsAffx.30226.4.S1_x_at--819--10131Chr08:18549590..18549614 (25 bp)
TATGCTCACTGCCTATTCCATATGC
LOC_Os08g30360
OsAffx.30226.4.S1_x_at--440--3751Chr08:18549594..18549618 (25 bp)
CTCACTGCCTATTCCATATGCAAAT
LOC_Os08g30360
OsAffx.30226.4.S1_x_at--355--43319Chr10:249717..249740 (24 bp)
CCATATGCAAATTTTCGTGACACCA
LOC_Os10g01440
OsAffx.30226.4.S1_x_at--357--73717Chr09:8080940..8081117 (25 bp)
GTGACACCATACTTTTAAGTCGTGA
LOC_Os09g13790
OsAffx.30226.4.S1_x_at--564--9791Chr08:18549653..18549677 (25 bp)
TAACCCTAGCGGAAGTTTATGAAGC
LOC_Os08g30360
Target Sequence 
GAAATATCGTAAGGCTCCGTCGCTGATCCAACTTCATCTATCTAATGATATTTTGCAAAAAGTGTTGCAGGAAAAGACTG
CTGCAGAACTTTGGCTCAAACTGGAATCGATCTGCATGTCTAAAAATCTAACCAGTAAGATGCATATCAAGATGAAGTTG
TTCTCGCACAAGTTGCAGGAGATCGTTGCCGACCTAGTGTCGATGGAGGTACAGTTTGATGATGAAGATTTAGGTCTTTT
ACTGTTATGCTCACTGCCTATTCCATATGCAAATTTTCGTGACACCATACTTTTAAGTCGTGATGAACTAACCCTAGCGG
AAGTTTATGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30226.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis