Browse Element(s) Details


OsAffx.17239.1.S1_at

Description tigr:9636.m03028
TID=OsAffx.17239.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3037011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30310Os.45976.1.S1_x_at2/118+18526936..18527873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30320NANA8+18528360..18529601transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30330NANA8+18532717..18537091transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30340Os.35288.1.S1_at11/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340OsAffx.23126.1.S1_at3/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340OsAffx.22776.2.S1_at2/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340Os.38043.1.S1_x_at1/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340Os.532.1.S1_s_at1/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30350NANA8+18547307..18548754hypothetical protein
LOC_Os08g30360OsAffx.30226.4.S1_x_at11/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.4.S1_at11/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.1.S1_at1/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.1.S1_x_at1/118+18549181..18549816hypothetical protein
LOC_Os08g30370OsAffx.17239.1.S1_at11/118+18551523..18553336hypothetical protein
LOC_Os08g30370Os.52363.1.S1_x_at6/118+18551523..18553336hypothetical protein
LOC_Os08g30380OsAffx.29433.1.S1_at11/118+18560460..18561182hypothetical protein
LOC_Os08g30390NANA8+18562307..18562808NA
LOC_Os08g30400NANA8+18565111..18569450Transposable element protein, putative, Retrotrans_gag
LOC_Os08g30410OsAffx.29434.1.S1_at11/118+18574343..18574756hypothetical protein
LOC_Os08g30410OsAffx.29434.1.S1_x_at11/118+18574343..18574756hypothetical protein
LOC_Os08g30410OsAffx.15821.2.S1_at1/118+18574343..18574756hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17239.1.S1_at--60--7731Chr08:18551795..18551816 (22 bp)
GGTGGCCATGCATCTTTAGTTACAA
LOC_Os08g30370
OsAffx.17239.1.S1_at--53--271Chr08:18551738..18551762 (25 bp)
ATATGGTACAGTGTGGTCGTGCCCA
LOC_Os08g30370
OsAffx.17239.1.S1_at--641--7191Chr08:18551723..18551747 (25 bp)
GTCGTGCCCAGGTTGGCTAGTCGTT
LOC_Os08g30370
OsAffx.17239.1.S1_at--6--7931Chr08:18551713..18551737 (25 bp)
GGTTGGCTAGTCGTTGCTTCTTTGC
LOC_Os08g30370
OsAffx.17239.1.S1_at--9--10711Chr08:18551685..18551709 (25 bp)
TTGCGAGATTCGACGCCTGTTCAAC
LOC_Os08g30370
OsAffx.17239.1.S1_at--1128--3671Chr08:18551661..18551685 (25 bp)
CTTTGTGTTCAACTTTGTGTTCTTG
LOC_Os08g30370
OsAffx.17239.1.S1_at--780--10832Chr08:18551647..18551671 (25 bp)
TTGTGTTCTTGATATCTCCGACGAT
LOC_Os08g30370
OsAffx.17239.1.S1_at--453--451Chr08:18551634..18551658 (25 bp)
ATCTCCGACGATTAATATCCCTGGC
LOC_Os08g30370
OsAffx.17239.1.S1_at--1149--2411Chr08:18551598..18551622 (25 bp)
AAAAGCAGGCAGTGTCCCTGTCCTT
LOC_Os08g30370
OsAffx.17239.1.S1_at--427--3871Chr08:18551581..18551605 (25 bp)
CTGTCCTTTTTCATTGGCTTCCTAA
LOC_Os08g30370
OsAffx.17239.1.S1_at--176--8491Chr08:18551567..18551591 (25 bp)
TGGCTTCCTAACATGATATCCTCAA
LOC_Os08g30370
Target Sequence 
GGTGGCCATGCATCTTTAGTTACAAATTTGTCTGATATAAAGGATCCAAAGTCACAGATATGGTACAGTGTGGTCGTGCC
CAGGTTGGCTAGTCGTTGCTTCTTTGCCTCTTGCGAGATTCGACGCCTGTTCAACTTTGTGTTCAACTTTGTGTTCTTGA
TATCTCCGACGATTAATATCCCTGGCCGGCTCCCAGGAAAAGCAGGCAGTGTCCCTGTCCTTTTTCATTGGCTTCCTAAC
ATGATATCCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis