Browse Element(s) Details


OsAffx.29434.1.S1_at

Description tigr:9635.m02512
TID=OsAffx.29434.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3041011/11hypothetical protein
LOC_Os07g2613011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30360OsAffx.30226.4.S1_x_at11/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.4.S1_at11/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.1.S1_at1/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.1.S1_x_at1/118+18549181..18549816hypothetical protein
LOC_Os08g30370OsAffx.17239.1.S1_at11/118+18551523..18553336hypothetical protein
LOC_Os08g30370Os.52363.1.S1_x_at6/118+18551523..18553336hypothetical protein
LOC_Os08g30380OsAffx.29433.1.S1_at11/118+18560460..18561182hypothetical protein
LOC_Os08g30390NANA8+18562307..18562808NA
LOC_Os08g30400NANA8+18565111..18569450Transposable element protein, putative, Retrotrans_gag
LOC_Os08g30410OsAffx.29434.1.S1_at11/118+18574343..18574756hypothetical protein
LOC_Os08g30410OsAffx.29434.1.S1_x_at11/118+18574343..18574756hypothetical protein
LOC_Os08g30410OsAffx.15821.2.S1_at1/118+18574343..18574756hypothetical protein
LOC_Os08g30420NANA8+18584109..18584325hypothetical protein
LOC_Os08g30430NANA8+18597129..18597635hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29434.1.S1_at--673--5992Chr08:18574408..18574432 (25 bp)
GAGACGGTTGCAGCTGATGGACACC
LOC_Os08g30410
OsAffx.29434.1.S1_at--231--6112Chr08:18574641..18574665 (25 bp)
GAGTCCGAGACGTCGACAGATCCCT
LOC_Os08g30410
OsAffx.29434.1.S1_at--155--1152Chr08:18574642..18574666 (25 bp)
AGTCCGAGACGTCGACAGATCCCTG
LOC_Os08g30410
OsAffx.29434.1.S1_at--615--9292Chr08:18574644..18574668 (25 bp)
TCCGAGACGTCGACAGATCCCTGCT
LOC_Os08g30410
OsAffx.29434.1.S1_at--677--4232Chr08:18574645..18574669 (25 bp)
CCGAGACGTCGACAGATCCCTGCTA
LOC_Os08g30410
OsAffx.29434.1.S1_at--248--4052Chr08:18574646..18574670 (25 bp)
CGAGACGTCGACAGATCCCTGCTAC
LOC_Os08g30410
OsAffx.29434.1.S1_at--637--5992Chr08:18574647..18574671 (25 bp)
GAGACGTCGACAGATCCCTGCTACG
LOC_Os08g30410
OsAffx.29434.1.S1_at--707--1392Chr08:18574648..18574672 (25 bp)
AGACGTCGACAGATCCCTGCTACGA
LOC_Os08g30410
OsAffx.29434.1.S1_at--94--5772Chr08:18574649..18574673 (25 bp)
GACGTCGACAGATCCCTGCTACGAC
LOC_Os08g30410
OsAffx.29434.1.S1_at--987--2132Chr08:18574656..18574680 (25 bp)
ACAGATCCCTGCTACGACCGCGACA
LOC_Os08g30410
OsAffx.29434.1.S1_at--807--9072Chr08:18574665..18574689 (25 bp)
TGCTACGACCGCGACATCGCTCTCG
LOC_Os08g30410
Target Sequence 
GAGACGGTTGCAGCTGATGGACACCNACGACGCCNGGGCCGCGCACGCAGCTACGCCGCCTGCGCGCGGCTGCGACCTCC
GCCTCCTCCGCTCCGACGACTACGTCGCCTCCCTCCCCGCCGTCCTCCNNGAGTCGCGGATCTGTTCCTCCGCCGCTTCA
ANGTCGGNGAGGACTGCCCGGCTGCTGCCGCGNCGTCATCGTCAACTAGTCGGGCNGGTTGCATCACGCGAAGGAGTCCG
AGACGTCGACAGATCCCTGCTACGACCGCGACATCGCTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis