Browse Element(s) Details


OsAffx.29434.1.S1_x_at

Description tigr:9635.m02512
TID=OsAffx.29434.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2613011/11hypothetical protein
LOC_Os08g3041011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26120Os.35344.18.S1_x_at11/117+14997725..15003772transposon protein, putative, Mutator sub-class
LOC_Os07g26120Os.35344.3.S1_x_at9/117+14997725..15003772transposon protein, putative, Mutator sub-class
LOC_Os07g26120OsAffx.22940.5.S1_x_at3/117+14997725..15003772transposon protein, putative, Mutator sub-class
LOC_Os07g26130OsAffx.29434.1.S1_at11/117+15017289..15017702hypothetical protein
LOC_Os07g26130OsAffx.29434.1.S1_x_at11/117+15017289..15017702hypothetical protein
LOC_Os07g26140NANA7+15021076..15021639transposon protein, putative, unclassified
LOC_Os07g26150OsAffx.5446.1.S1_s_at11/117+15031692..15035672RADIALIS, putative, expressed
LOC_Os07g26150Os.11353.1.S1_at1/117+15031692..15035672RADIALIS, putative, expressed
LOC_Os07g26160OsAffx.18924.2.S1_x_at3/117+15038690..15039772hypothetical protein
LOC_Os07g26160OsAffx.19842.1.S1_at2/117+15038690..15039772hypothetical protein
LOC_Os07g26160OsAffx.18924.3.S1_at2/117+15038690..15039772hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29434.1.S1_x_at--672--5992Chr08:18574408..18574432 (25 bp)
GAGACGGTTGCAGCTGATGGACACC
LOC_Os08g30410
OsAffx.29434.1.S1_x_at--123--6112Chr08:18574538..18574562 (25 bp)
GAGTCGCGGATCTGTTCCTCCGCCG
LOC_Os08g30410
OsAffx.29434.1.S1_x_at--435--6672Chr08:18574625..18574649 (25 bp)
GTTGCATCACGCGAAGGAGTCCGAG
LOC_Os08g30410
OsAffx.29434.1.S1_x_at--230--6112Chr08:18574641..18574665 (25 bp)
GAGTCCGAGACGTCGACAGATCCCT
LOC_Os08g30410
OsAffx.29434.1.S1_x_at--154--1152Chr08:18574642..18574666 (25 bp)
AGTCCGAGACGTCGACAGATCCCTG
LOC_Os08g30410
OsAffx.29434.1.S1_x_at--614--9292Chr08:18574644..18574668 (25 bp)
TCCGAGACGTCGACAGATCCCTGCT
LOC_Os08g30410
OsAffx.29434.1.S1_x_at--638--5992Chr08:18574647..18574671 (25 bp)
GAGACGTCGACAGATCCCTGCTACG
LOC_Os08g30410
OsAffx.29434.1.S1_x_at--706--1392Chr08:18574648..18574672 (25 bp)
AGACGTCGACAGATCCCTGCTACGA
LOC_Os08g30410
OsAffx.29434.1.S1_x_at--95--5772Chr08:18574649..18574673 (25 bp)
GACGTCGACAGATCCCTGCTACGAC
LOC_Os08g30410
OsAffx.29434.1.S1_x_at--988--2132Chr08:18574656..18574680 (25 bp)
ACAGATCCCTGCTACGACCGCGACA
LOC_Os08g30410
OsAffx.29434.1.S1_x_at--806--9072Chr08:18574665..18574689 (25 bp)
TGCTACGACCGCGACATCGCTCTCG
LOC_Os08g30410
Target Sequence 
GAGACGGTTGCAGCTGATGGACACCNACGACGCCNGGGCCGCGCACGCAGCTACGCCGCCTGCGCGCGGCTGCGACCTCC
GCCTCCTCCGCTCCGACGACTACGTCGCCTCCCTCCCCGCCGTCCTCCNNGAGTCGCGGATCTGTTCCTCCGCCGCTTCA
ANGTCGGNGAGGACTGCCCGGCTGCTGCCGCGNCGTCATCGTCAACTAGTCGGGCNGGTTGCATCACGCGAAGGAGTCCG
AGACGTCGACAGATCCCTGCTACGACCGCGACATCGCTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29434.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis