Browse Element(s) Details


OsAffx.5446.1.S1_s_at

Description tigr:9635.m02514
TID=OsAffx.5446.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to myb-related protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2615011/11RADIALIS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26130OsAffx.29434.1.S1_at11/117+15017289..15017702hypothetical protein
LOC_Os07g26130OsAffx.29434.1.S1_x_at11/117+15017289..15017702hypothetical protein
LOC_Os07g26140NANA7+15021076..15021639transposon protein, putative, unclassified
LOC_Os07g26150OsAffx.5446.1.S1_s_at11/117+15031692..15035672RADIALIS, putative, expressed
LOC_Os07g26150Os.11353.1.S1_at1/117+15031692..15035672RADIALIS, putative, expressed
LOC_Os07g26160OsAffx.18924.2.S1_x_at3/117+15038690..15039772hypothetical protein
LOC_Os07g26160OsAffx.19842.1.S1_at2/117+15038690..15039772hypothetical protein
LOC_Os07g26160OsAffx.18924.3.S1_at2/117+15038690..15039772hypothetical protein
LOC_Os07g26170OsAffx.16418.1.S1_at11/117+15047109..15048752Legume lectins alpha domain containing protein
LOC_Os07g26180OsAffx.28596.1.S1_at11/117+15053760..15055388lectin protein kinase family protein, putative
LOC_Os07g26190OsAffx.29302.1.S1_at11/117+15058180..15060974hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5446.1.S1_s_at--1108--4731Chr07:15031912..15031936 (25 bp)
GCTGTTCGAGCAGGCCATTGCCTAC
LOC_Os07g26150
OsAffx.5446.1.S1_s_at--270--6151Chr07:15032006..15032030 (25 bp)
GAGGTGCGCCTCCACTTCGAGATCC
LOC_Os07g26150
OsAffx.5446.1.S1_s_at--367--4471Chr07:15032013..15032037 (25 bp)
GCCTCCACTTCGAGATCCTCGTGGA
LOC_Os07g26150
OsAffx.5446.1.S1_s_at--458--4271Chr07:15032029..15032053 (25 bp)
CCTCGTGGACGATATCAAGCTGATT
LOC_Os07g26150
OsAffx.5446.1.S1_s_at--966--8811Chr07:15032049..15032073 (25 bp)
TGATTGAGGCAAGGCGAGTCCCGTT
LOC_Os07g26150
OsAffx.5446.1.S1_s_at--166--3551Chr07:15035315..15035339 (25 bp)
CATCTGAGGTTCCAGCAAGGAAATA
LOC_Os07g26150
OsAffx.5446.1.S1_s_at--21--3651Chr07:15035361..15035385 (25 bp)
CTTCCTGTGGCTAGTTGTTGAAGGA
LOC_Os07g26150
OsAffx.5446.1.S1_s_at--294--6611Chr07:15035419..15035443 (25 bp)
GATTGTGGTCGATTGCTTGGTTATA
LOC_Os07g26150
OsAffx.5446.1.S1_s_at--91--4951Chr07:15035532..15035556 (25 bp)
GCATTGTGTGTGGTTTTGAACATTC
LOC_Os07g26150
OsAffx.5446.1.S1_s_at--958--7871Chr07:15035543..15035567 (25 bp)
GGTTTTGAACATTCCAGCTATACTA
LOC_Os07g26150
OsAffx.5446.1.S1_s_at--11--5491Chr07:15035549..15035573 (25 bp)
GAACATTCCAGCTATACTATATATG
LOC_Os07g26150
Target Sequence 
GCTGTTCGAGCAGGCCATTGCCTACTACGGCGAGGGCGCGCCTGATCTCTGGCACAAGGTGTCCCGCGCCATGGGGGGCA
CCAAGACAGCCGACGAGGTGCGCCTCCACTTCGAGATCCTCGTGGACGATATCAAGCTGATTGAGGCAAGGCGAGTCCCG
TTCCCCAAGTACAATACACAGGGAGCATGGAACTGACCGACTGAGGGGTGGAAGCATCTGAGGTTCCAGCAAGGAAATAA
CTCCAATATAAACTATATTCCTTCCTGTGGCTAGTTGTTGAAGGAAAGCATATTGATATATTGTTACTGTGTTAAGAAGA
TTGTGGTCGATTGCTTGGTTATAAATAAAAGAAGAAAGGGATTGTCTGTATATACTTTTAGGTTGTAAAGCAAATCAGTG
TTGATCTTGCAAAAAAACTAGCCTGCATTTGGCATTGTGTGTGGTTTTGAACATTCCAGCTATACTATATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5446.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis