Browse Element(s) Details


OsAffx.28596.1.S1_at

Description tigr:9635.m02517
TID=OsAffx.28596.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2618011/11lectin protein kinase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26150OsAffx.5446.1.S1_s_at11/117+15031692..15035672RADIALIS, putative, expressed
LOC_Os07g26150Os.11353.1.S1_at1/117+15031692..15035672RADIALIS, putative, expressed
LOC_Os07g26160OsAffx.18924.2.S1_x_at3/117+15038690..15039772hypothetical protein
LOC_Os07g26160OsAffx.19842.1.S1_at2/117+15038690..15039772hypothetical protein
LOC_Os07g26160OsAffx.18924.3.S1_at2/117+15038690..15039772hypothetical protein
LOC_Os07g26170OsAffx.16418.1.S1_at11/117+15047109..15048752Legume lectins alpha domain containing protein
LOC_Os07g26180OsAffx.28596.1.S1_at11/117+15053760..15055388lectin protein kinase family protein, putative
LOC_Os07g26190OsAffx.29302.1.S1_at11/117+15058180..15060974hypothetical protein
LOC_Os07g26200OsAffx.13101.1.S1_at7/117+15061632..15062434hypothetical protein
LOC_Os07g26210Os.27796.1.A1_at8/117+15067969..15075744hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28596.1.S1_at--50--1471Chr07:15053790..15053814 (25 bp)
AGAAGGGCACACTACAGTGGCCAAA
LOC_Os07g26180
OsAffx.28596.1.S1_at--241--2791Chr07:15054953..15054974 (22 bp)
AAGAGGTTTGAACGCCAAGCTTGCC
LOC_Os07g26180
OsAffx.28596.1.S1_at--398--7951Chr07:15054991..15055015 (25 bp)
GGATCACGGAAAACGCCAAGGGCAA
LOC_Os07g26180
OsAffx.28596.1.S1_at--938--1071Chr07:15055009..15055033 (25 bp)
AGGGCAAACTGCTGATAGTGGCCAT
LOC_Os07g26180
OsAffx.28596.1.S1_at--1108--3331Chr07:15055074..15055098 (25 bp)
CACGGCGAGCTTGAATTAATATCCA
LOC_Os07g26180
OsAffx.28596.1.S1_at--410--9251Chr07:15055126..15055150 (25 bp)
TCCTCCTAGAGATCGCTTGTACCAG
LOC_Os07g26180
OsAffx.28596.1.S1_at--241--6511Chr07:15055176..15055200 (25 bp)
GATATGTACATGAACCACGCCGGCG
LOC_Os07g26180
OsAffx.28596.1.S1_at--1119--7591Chr07:15055275..15055299 (25 bp)
GGGCACTGGTGCTCTATGAAAGACC
LOC_Os07g26180
OsAffx.28596.1.S1_at--414--1151Chr07:15055295..15055319 (25 bp)
AGACCCAATAAAGCGGCCTACCATG
LOC_Os07g26180
OsAffx.28596.1.S1_at--530--4711Chr07:15055307..15055331 (25 bp)
GCGGCCTACCATGAGTGATGCTATG
LOC_Os07g26180
OsAffx.28596.1.S1_at--1088--6331Chr07:15055323..15055347 (25 bp)
GATGCTATGGATGTCCTGCAGCAGT
LOC_Os07g26180
Target Sequence 
AGAAGGGCACACTACAGTGGCCAAAGAGGTTTGAACGCCAAGCTTGCCGACTTCGGGCTGGCGAGGATCACGGAAAACGC
CAAGGGCAAACTGCTGATAGTGGCCATGGGGTCAATTGATCAGTACATAGCTCCAGAGTACAAGATACACGGCGAGCTTG
AATTAATATCCAGCACCGACGTCTACAGCTTCGGACTCGTCCTCCTAGAGATCGCTTGTACCAGGAAAGACAGGGAGCAG
ATCTGGAACGATATGTACATGAACCACGCCGGCGTGGCTGCCGTCGCCGATCCCAACAAGCTGAAGGGCGAGTTCGACAA
GAGGCAGATGGAGCGTGTGATCATCCTGGGGCACTGGTGCTCTATGAAAGACCCAATAAAGCGGCCTACCATGAGTGATG
CTATGGATGTCCTGCAGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis