Browse Element(s) Details


OsAffx.18924.3.S1_at

Description tigr:9633.m02675
TID=OsAffx.18924.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2916011/11hypothetical protein
LOC_Os07g261602/11hypothetical protein
LOC_Os09g389401/11hypothetical protein
LOC_Os08g212001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g290801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g353301/11hypothetical protein
LOC_Os02g179601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29120OsAffx.22385.1.S1_x_at3/115+17025004..17030742retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g29120OsAffx.20329.1.S1_at1/115+17025004..17030742retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g29120Os.20177.1.S1_at1/115+17025004..17030742retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g29130NANA5+17035970..17038432retrotransposon protein, putative, unclassified
LOC_Os05g29140NANA5+17041144..17045370retrotransposon protein, putative, unclassified
LOC_Os05g29150NANA5+17047369..17048285hypothetical protein
LOC_Os05g29160OsAffx.18924.3.S1_at11/115+17050358..17051401hypothetical protein
LOC_Os05g29160OsAffx.18924.2.S1_x_at4/115+17050358..17051401hypothetical protein
LOC_Os05g29170Os.49558.1.S1_at11/115+17054231..17054770expressed protein
LOC_Os05g29174Os.46012.2.S1_x_at9/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29174Os.46012.3.S1_x_at6/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29174Os.27088.1.A1_x_at4/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29174Os.54691.1.S1_x_at1/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29676OsAffx.25718.1.S1_at2/115+17068353..17071320Zinc finger, C3HC4 type family protein
LOC_Os05g29680OsAffx.14871.1.S1_at11/115+17073457..17073885hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18924.3.S1_at--630--2071Chr05:17051229..17051253 (25 bp)
ACATAGGACAATGGCATCGGGAAAA
LOC_Os05g29160
OsAffx.18924.3.S1_at--98--7631Chr05:17051211..17051235 (25 bp)
GGGAAAAGTTGCTCGATGTCGCTTC
LOC_Os05g29160
OsAffx.18924.3.S1_at--375--2331Chr05:17051207..17051231 (25 bp)
AAAGTTGCTCGATGTCGCTTCTTAC
LOC_Os05g29160
OsAffx.18924.3.S1_at--744--6671Chr05:17051204..17051228 (25 bp)
GTTGCTCGATGTCGCTTCTTACGTA
LOC_Os05g29160
OsAffx.18924.3.S1_at--82--10591Chr05:17050996..17051020 (25 bp)
TTCTCTCGACAAAGACATCAAGACA
LOC_Os05g29160
OsAffx.18924.3.S1_at--132--5672Chr07:15039328..15039347 (20 bp)
GACATCAAGACATATCAGGAATTTC
LOC_Os07g26160
OsAffx.18924.3.S1_at--623--2717Chr08:12654589..12655049 (25 bp)
AAGAATTATCGATCTCTTCCAAAAT
LOC_Os08g21200
OsAffx.18924.3.S1_at--761--151Chr05:17050528..17050977 (25 bp)
ATTATCGATCTCTTCCAAAATTCTC
LOC_Os05g29160
OsAffx.18924.3.S1_at--703--2271Chr05:17050478..17050502 (25 bp)
AAATCCATTCAGGACTTTCAGCGGG
LOC_Os05g29160
OsAffx.18924.3.S1_at--225--4331Chr05:17050474..17050498 (25 bp)
CCATTCAGGACTTTCAGCGGGACAT
LOC_Os05g29160
OsAffx.18924.3.S1_at--706--9631Chr05:17050470..17050494 (25 bp)
TCAGGACTTTCAGCGGGACATGTGC
LOC_Os05g29160
Target Sequence 
ACATAGGACAATGGCATCGGGAAAAGTTGCTCGATGTCGCTTCTTACGTAGCTATAGCGCTTGAATCTACGCAGGACAAG
GAGTGTGTTTATGCCCCATGTGCCTTTGACGACCATTGGATAGTCTTTCTTCTATATCCAAAGTACAATGAAGTCATCGT
CTTGGATTCTCTCGACAAAGACATCAAGACATATCAGGAATTTCTAAGAATTATCGATCTCTTCCAAAATTCTCCAAGTC
TGAAAGAGAGCTCGATGATAAATCCATTCAGGACTTTCAGCGGGACATGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18924.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis