Browse Element(s) Details


Os.27796.1.A1_at

Description gb:AK070141.1
DB_XREF= gi:32980165
TID=Os.27796.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041G24, full insert sequence.
FL= gb:AK070141.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g262108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26170OsAffx.16418.1.S1_at11/117+15047109..15048752Legume lectins alpha domain containing protein
LOC_Os07g26180OsAffx.28596.1.S1_at11/117+15053760..15055388lectin protein kinase family protein, putative
LOC_Os07g26190OsAffx.29302.1.S1_at11/117+15058180..15060974hypothetical protein
LOC_Os07g26200OsAffx.13101.1.S1_at7/117+15061632..15062434hypothetical protein
LOC_Os07g26210Os.27796.1.A1_at8/117+15067969..15075744hypothetical protein
LOC_Os07g26220OsAffx.20329.1.S1_at4/117+15083235..15087638retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26230NANA7+15087988..15089214hypothetical protein
LOC_Os07g26240NANA7+15092424..15092660hypothetical protein
LOC_Os07g26250NANA7+15094909..15095436transposon protein, putative, unclassified
LOC_Os07g26260OsAffx.22947.1.S1_x_at4/117+15099090..15103570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26260OsAffx.22947.2.S1_x_at2/117+15099090..15103570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26260OsAffx.22947.5.S1_at1/117+15099090..15103570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26260OsAffx.22947.3.S1_x_at1/117+15099090..15103570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26260OsAffx.22947.5.S1_x_at1/117+15099090..15103570retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27796.1.A1_at--687--2951Chr07:15068743..15068767 (25 bp)
AATGGACGATCAGGCTTTCACTACT
LOC_Os07g26210
Os.27796.1.A1_at--932--10371Chr07:15068708..15068732 (25 bp)
TTTTCACCGCAGGATGGTCCGAAGA
LOC_Os07g26210
Os.27796.1.A1_at--440--2611Chr07:15068191..15068215 (25 bp)
AACCCCTGAAGCATGGACGATCGAC
LOC_Os07g26210
Os.27796.1.A1_at--298--5731Chr07:15068169..15068193 (25 bp)
GACGGCCACTACAGGTCGCTGATAT
LOC_Os07g26210
Os.27796.1.A1_at--364--651Chr07:15068118..15068142 (25 bp)
ATGCAGTATGCATTGTCTCCTCCAA
LOC_Os07g26210
Os.27796.1.A1_at--99--2751Chr07:15068095..15068119 (25 bp)
AAGAACCATACTCGAGGCGCCGAAG
LOC_Os07g26210
Os.27796.1.A1_at--1132--1291Chr07:15068000..15068024 (25 bp)
AGATGACGCCCAAGAACAGCTGCTT
LOC_Os07g26210
Os.27796.1.A1_at--35--7651Chr07:15067974..15067998 (25 bp)
GGGAGCAGCTCGTCTAACTGCGAAT
LOC_Os07g26210
Os.27796.1.A1_at--584--6271Chr07:15067902..15067926 (25 bp)
GATGTTCCTAGTGAATTTCCTGTAC
NONE
Os.27796.1.A1_at--294--2731Chr07:15067870..15067894 (25 bp)
AAGAAGAAAGGCACTGCTCCGTCTT
NONE
Os.27796.1.A1_at--631--4791Chr07:15067855..15067879 (25 bp)
GCTCCGTCTTCTCTTATTTGTGGTG
NONE
Target Sequence 
AATGGACGATCAGGCTTTCACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGGGTACTGGTTCC
AAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTCGCTGATATACATGCGGCCCCTTGCAATCTGGGCAATGCAG
TATGCATTGTCTCCTCCAAGAACCATACTCGAGGCGCCGAAGGTGAACACCATGGACAGGACCTCCTACATCTCGCCCAG
CACGCTCCAGTTCCTGCAGGACAGCGTCAGGAAGATGACGCCCAAGAACAGCTGCTTCGGGAGCAGCTCGTCTAACTGCG
AATGCTGATGTGATGATTATTAGAGGAATGGTGTTTTAACTGTGATCACTGATGTTCCTAGTGAATTTCCTGTACATGTT
CGAAGAAGAAAGGCACTGCTCCGTCTTCTCTTATTTGTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27796.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis